Strain Fitness in Pseudomonas simiae WCS417 around PS417_28120

Experiment: root sample 6; outgrowth in LB

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntPS417_28115 and PS417_28120 are separated by 11 nucleotidesPS417_28120 and PS417_28125 are separated by 333 nucleotides PS417_28115: PS417_28115 - phosphoribosylaminoimidazole carboxylase, at 6,066,820 to 6,067,905 _28115 PS417_28120: PS417_28120 - N5-carboxyaminoimidazole ribonucleotide mutase, at 6,067,917 to 6,068,408 _28120 PS417_28125: PS417_28125 - LysR family transcriptional regulator, at 6,068,742 to 6,069,650 _28125 Position (kb) 6067 6068 6069Strain fitness (log2 ratio) -2 -1 0 1 2at 6068.497 kb on - strandat 6068.530 kb on - strandat 6068.537 kb on - strandat 6068.539 kb on + strandat 6068.539 kb on + strandat 6068.539 kb on + strandat 6068.540 kb on - strandat 6068.548 kb on + strandat 6068.549 kb on - strandat 6068.599 kb on - strandat 6068.645 kb on - strandat 6068.693 kb on - strand

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction root sample 6; outgrowth in LB
remove
6,068,497 - -1.8
6,068,530 - +0.0
6,068,537 - +0.5
6,068,539 + -0.2
6,068,539 + -1.2
6,068,539 + +0.1
6,068,540 - -0.2
6,068,548 + -1.6
6,068,549 - +1.1
6,068,599 - +1.9
6,068,645 - +0.5
6,068,693 - +0.5

Or see this region's nucleotide sequence