Experiment: root sample 6; outgrowth in LB
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt PS417_27785 and PS417_27790 are separated by 19 nucleotides PS417_27790 and PS417_27795 are separated by 201 nucleotides PS417_27795 and PS417_27800 are separated by 82 nucleotides
PS417_27785: PS417_27785 - phosphoglucomutase, at 5,991,706 to 5,993,103
_27785
PS417_27790: PS417_27790 - acetylglutamate kinase, at 5,993,123 to 5,994,028
_27790
PS417_27795: PS417_27795 - orotate phosphoribosyltransferase, at 5,994,230 to 5,994,874
_27795
PS417_27800: PS417_27800 - exodeoxyribonuclease III, at 5,994,957 to 5,995,736
_27800
Position (kb) 5993
5994
5995 Strain fitness (log2 ratio) -1
0
1
2 at 5992.186 kb on + strand, within PS417_27785 at 5992.616 kb on + strand, within PS417_27785 at 5992.737 kb on + strand, within PS417_27785 at 5992.738 kb on - strand, within PS417_27785 at 5992.738 kb on - strand, within PS417_27785 at 5992.738 kb on - strand, within PS417_27785 at 5992.741 kb on + strand, within PS417_27785 at 5992.742 kb on - strand, within PS417_27785 at 5992.821 kb on + strand, within PS417_27785 at 5993.093 kb on + strand at 5993.094 kb on - strand at 5993.195 kb on + strand at 5993.196 kb on - strand at 5993.867 kb on + strand, within PS417_27790 at 5994.027 kb on - strand at 5994.162 kb on - strand at 5994.515 kb on + strand, within PS417_27795 at 5994.891 kb on - strand at 5994.891 kb on - strand at 5994.910 kb on - strand at 5994.910 kb on - strand at 5994.925 kb on - strand at 5994.930 kb on - strand at 5994.956 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction root sample 6; outgrowth in LB remove 5,992,186 + PS417_27785 0.34 +0.9 5,992,616 + PS417_27785 0.65 +1.7 5,992,737 + PS417_27785 0.74 +0.3 5,992,738 - PS417_27785 0.74 -0.2 5,992,738 - PS417_27785 0.74 -1.1 5,992,738 - PS417_27785 0.74 +0.6 5,992,741 + PS417_27785 0.74 +0.0 5,992,742 - PS417_27785 0.74 +0.3 5,992,821 + PS417_27785 0.80 +1.9 5,993,093 + +2.1 5,993,094 - +0.2 5,993,195 + +0.1 5,993,196 - -0.1 5,993,867 + PS417_27790 0.82 +0.2 5,994,027 - +0.5 5,994,162 - +0.7 5,994,515 + PS417_27795 0.44 -1.1 5,994,891 - -0.8 5,994,891 - -0.1 5,994,910 - -0.1 5,994,910 - +1.2 5,994,925 - +1.7 5,994,930 - +0.1 5,994,956 + +0.4
Or see this region's nucleotide sequence