Experiment: root sample 6; outgrowth in LB
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt PS417_27765 and PS417_27770 are separated by 27 nucleotides PS417_27770 and PS417_27775 are separated by 141 nucleotides PS417_27775 and PS417_27780 are separated by 5 nucleotides PS417_27780 and PS417_27785 are separated by 264 nucleotides
PS417_27765: PS417_27765 - peptide ABC transporter substrate-binding protein, at 5,987,336 to 5,988,928
_27765
PS417_27770: PS417_27770 - hypothetical protein, at 5,988,956 to 5,989,630
_27770
PS417_27775: PS417_27775 - phosphopantothenoylcysteine decarboxylase, at 5,989,772 to 5,990,980
_27775
PS417_27780: PS417_27780 - deoxyuridine 5'-triphosphate nucleotidohydrolase, at 5,990,986 to 5,991,441
_27780
PS417_27785: PS417_27785 - phosphoglucomutase, at 5,991,706 to 5,993,103
_27785
Position (kb) 5989
5990
5991 Strain fitness (log2 ratio) -1
0
1
2 at 5989.140 kb on + strand, within PS417_27770 at 5989.173 kb on + strand, within PS417_27770 at 5989.173 kb on + strand, within PS417_27770 at 5989.625 kb on - strand at 5991.444 kb on - strand at 5991.630 kb on + strand at 5991.631 kb on - strand at 5991.761 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction root sample 6; outgrowth in LB remove 5,989,140 + PS417_27770 0.27 -1.6 5,989,173 + PS417_27770 0.32 +0.2 5,989,173 + PS417_27770 0.32 -0.3 5,989,625 - +0.3 5,991,444 - -0.5 5,991,630 + +2.5 5,991,631 - -0.1 5,991,761 - +2.1
Or see this region's nucleotide sequence