Experiment: root sample 6; outgrowth in LB
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt PS417_27390 and PS417_27395 overlap by 4 nucleotides PS417_27395 and PS417_27400 overlap by 14 nucleotides PS417_27400 and PS417_27405 overlap by 29 nucleotides PS417_27405 and PS417_27410 overlap by 11 nucleotides
PS417_27390: PS417_27390 - ABC transporter permease, at 5,909,814 to 5,910,482
_27390
PS417_27395: PS417_27395 - amino acid ABC transporter permease, at 5,910,479 to 5,911,129
_27395
PS417_27400: PS417_27400 - amino acid ABC transporter ATP-binding protein, at 5,911,116 to 5,911,853
_27400
PS417_27405: PS417_27405 - hypothetical protein, at 5,911,825 to 5,912,364
_27405
PS417_27410: PS417_27410 - outer membrane usher protein, at 5,912,354 to 5,914,831
_27410
Position (kb) 5911
5912 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3
4
5
6
7
8 at 5910.384 kb on + strand, within PS417_27390 at 5910.385 kb on - strand, within PS417_27390 at 5910.405 kb on + strand, within PS417_27390 at 5910.405 kb on + strand, within PS417_27390 at 5910.405 kb on + strand, within PS417_27390 at 5910.405 kb on + strand, within PS417_27390 at 5910.406 kb on - strand, within PS417_27390 at 5910.406 kb on - strand, within PS417_27390 at 5910.406 kb on - strand, within PS417_27390 at 5910.406 kb on - strand, within PS417_27390 at 5910.406 kb on - strand, within PS417_27390 at 5910.406 kb on - strand, within PS417_27390 at 5910.406 kb on - strand, within PS417_27390 at 5910.413 kb on + strand, within PS417_27390 at 5910.413 kb on + strand, within PS417_27390 at 5910.645 kb on - strand, within PS417_27395 at 5910.725 kb on - strand, within PS417_27395 at 5910.725 kb on - strand, within PS417_27395 at 5910.875 kb on + strand, within PS417_27395 at 5910.880 kb on - strand, within PS417_27395 at 5910.880 kb on - strand, within PS417_27395 at 5911.015 kb on + strand at 5911.038 kb on - strand, within PS417_27395 at 5911.145 kb on + strand at 5911.145 kb on + strand at 5911.146 kb on - strand at 5911.146 kb on - strand at 5911.146 kb on - strand at 5911.149 kb on + strand at 5911.149 kb on + strand at 5911.149 kb on + strand at 5911.149 kb on + strand at 5911.150 kb on - strand at 5911.150 kb on - strand at 5911.150 kb on - strand at 5911.150 kb on - strand at 5911.150 kb on - strand at 5911.153 kb on - strand at 5911.153 kb on - strand at 5911.168 kb on + strand at 5911.168 kb on + strand at 5911.168 kb on + strand at 5911.168 kb on + strand at 5911.169 kb on - strand at 5911.169 kb on - strand at 5911.311 kb on + strand, within PS417_27400 at 5911.930 kb on + strand, within PS417_27405 at 5911.930 kb on + strand, within PS417_27405 at 5911.936 kb on + strand, within PS417_27405 at 5911.936 kb on + strand, within PS417_27405 at 5911.937 kb on - strand, within PS417_27405 at 5911.988 kb on + strand, within PS417_27405 at 5911.988 kb on + strand, within PS417_27405 at 5911.989 kb on - strand, within PS417_27405 at 5911.989 kb on - strand, within PS417_27405 at 5911.989 kb on - strand, within PS417_27405 at 5912.086 kb on - strand, within PS417_27405 at 5912.193 kb on + strand, within PS417_27405 at 5912.194 kb on - strand, within PS417_27405 at 5912.194 kb on - strand, within PS417_27405 at 5912.638 kb on + strand, within PS417_27410 at 5912.639 kb on - strand, within PS417_27410 at 5912.739 kb on + strand, within PS417_27410
Per-strain Table
Position Strand Gene LocusTag Fraction root sample 6; outgrowth in LB remove 5,910,384 + PS417_27390 0.85 -0.1 5,910,385 - PS417_27390 0.85 +0.1 5,910,405 + PS417_27390 0.88 -0.9 5,910,405 + PS417_27390 0.88 -0.3 5,910,405 + PS417_27390 0.88 -0.0 5,910,405 + PS417_27390 0.88 -0.7 5,910,406 - PS417_27390 0.88 +0.4 5,910,406 - PS417_27390 0.88 +0.1 5,910,406 - PS417_27390 0.88 +3.3 5,910,406 - PS417_27390 0.88 -0.9 5,910,406 - PS417_27390 0.88 +0.6 5,910,406 - PS417_27390 0.88 +2.0 5,910,406 - PS417_27390 0.88 +0.6 5,910,413 + PS417_27390 0.90 -0.1 5,910,413 + PS417_27390 0.90 -0.5 5,910,645 - PS417_27395 0.25 -1.6 5,910,725 - PS417_27395 0.38 -0.5 5,910,725 - PS417_27395 0.38 +0.7 5,910,875 + PS417_27395 0.61 +8.0 5,910,880 - PS417_27395 0.62 +1.6 5,910,880 - PS417_27395 0.62 -0.8 5,911,015 + +4.3 5,911,038 - PS417_27395 0.86 -3.0 5,911,145 + -2.9 5,911,145 + +1.6 5,911,146 - -1.4 5,911,146 - +0.6 5,911,146 - -0.9 5,911,149 + +0.6 5,911,149 + -1.5 5,911,149 + -0.3 5,911,149 + +1.1 5,911,150 - +0.7 5,911,150 - -0.8 5,911,150 - +0.2 5,911,150 - -0.7 5,911,150 - -0.4 5,911,153 - -0.0 5,911,153 - -0.6 5,911,168 + -0.5 5,911,168 + +2.3 5,911,168 + -0.0 5,911,168 + -0.3 5,911,169 - +0.5 5,911,169 - -0.2 5,911,311 + PS417_27400 0.26 -0.1 5,911,930 + PS417_27405 0.19 -0.4 5,911,930 + PS417_27405 0.19 -0.1 5,911,936 + PS417_27405 0.21 -1.3 5,911,936 + PS417_27405 0.21 +0.0 5,911,937 - PS417_27405 0.21 -0.8 5,911,988 + PS417_27405 0.30 +0.7 5,911,988 + PS417_27405 0.30 -0.1 5,911,989 - PS417_27405 0.30 -1.1 5,911,989 - PS417_27405 0.30 -0.3 5,911,989 - PS417_27405 0.30 +1.0 5,912,086 - PS417_27405 0.48 +0.5 5,912,193 + PS417_27405 0.68 -0.0 5,912,194 - PS417_27405 0.68 +2.4 5,912,194 - PS417_27405 0.68 +0.4 5,912,638 + PS417_27410 0.11 -1.3 5,912,639 - PS417_27410 0.12 +0.2 5,912,739 + PS417_27410 0.16 -0.3
Or see this region's nucleotide sequence