Experiment: root sample 6; outgrowth in LB
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt PS417_27270 and PS417_27275 are separated by 3 nucleotides PS417_27275 and PS417_27280 overlap by 8 nucleotides PS417_27280 and PS417_27285 overlap by 4 nucleotides
PS417_27270: PS417_27270 - 2-octaprenyl-3-methyl-6-methoxy-1,4-benzoquinol hydroxylase, at 5,886,714 to 5,887,937
_27270
PS417_27275: PS417_27275 - hypothetical protein, at 5,887,941 to 5,888,426
_27275
PS417_27280: PS417_27280 - 2-octaprenyl-6-methoxyphenyl hydroxylase, at 5,888,419 to 5,889,606
_27280
PS417_27285: PS417_27285 - Xaa-Pro aminopeptidase, at 5,889,603 to 5,890,925
_27285
Position (kb) 5888
5889
5890 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 5887.943 kb on - strand at 5887.976 kb on - strand at 5888.048 kb on - strand, within PS417_27275 at 5888.048 kb on - strand, within PS417_27275 at 5888.116 kb on + strand, within PS417_27275 at 5888.117 kb on - strand, within PS417_27275 at 5888.176 kb on + strand, within PS417_27275 at 5888.176 kb on + strand, within PS417_27275 at 5888.177 kb on - strand, within PS417_27275 at 5888.212 kb on + strand, within PS417_27275 at 5888.263 kb on + strand, within PS417_27275 at 5888.263 kb on + strand, within PS417_27275 at 5888.263 kb on + strand, within PS417_27275 at 5888.263 kb on + strand, within PS417_27275 at 5888.264 kb on - strand, within PS417_27275 at 5888.275 kb on + strand, within PS417_27275 at 5888.275 kb on + strand, within PS417_27275 at 5888.353 kb on + strand, within PS417_27275 at 5888.354 kb on - strand, within PS417_27275 at 5888.420 kb on + strand at 5888.421 kb on - strand at 5888.421 kb on - strand at 5888.421 kb on - strand at 5889.761 kb on + strand, within PS417_27285 at 5889.762 kb on - strand, within PS417_27285 at 5889.762 kb on - strand, within PS417_27285 at 5889.762 kb on - strand, within PS417_27285 at 5889.763 kb on + strand, within PS417_27285 at 5889.764 kb on - strand, within PS417_27285 at 5889.764 kb on - strand, within PS417_27285 at 5889.764 kb on - strand, within PS417_27285 at 5889.830 kb on - strand, within PS417_27285 at 5889.883 kb on + strand, within PS417_27285 at 5889.883 kb on + strand, within PS417_27285 at 5889.883 kb on + strand, within PS417_27285 at 5889.883 kb on + strand, within PS417_27285 at 5889.883 kb on + strand, within PS417_27285 at 5889.884 kb on - strand, within PS417_27285 at 5889.884 kb on - strand, within PS417_27285 at 5889.884 kb on - strand, within PS417_27285 at 5889.884 kb on - strand, within PS417_27285 at 5889.893 kb on + strand, within PS417_27285 at 5889.893 kb on + strand, within PS417_27285 at 5889.895 kb on + strand, within PS417_27285 at 5889.895 kb on + strand, within PS417_27285 at 5889.895 kb on + strand, within PS417_27285 at 5889.896 kb on - strand, within PS417_27285 at 5889.896 kb on - strand, within PS417_27285 at 5890.047 kb on + strand, within PS417_27285 at 5890.048 kb on - strand, within PS417_27285 at 5890.050 kb on + strand, within PS417_27285 at 5890.051 kb on - strand, within PS417_27285 at 5890.051 kb on - strand, within PS417_27285 at 5890.051 kb on - strand, within PS417_27285 at 5890.051 kb on - strand, within PS417_27285 at 5890.051 kb on - strand, within PS417_27285 at 5890.051 kb on - strand at 5890.123 kb on + strand, within PS417_27285 at 5890.401 kb on - strand, within PS417_27285 at 5890.401 kb on - strand, within PS417_27285 at 5890.544 kb on - strand, within PS417_27285 at 5890.544 kb on - strand, within PS417_27285
Per-strain Table
Position Strand Gene LocusTag Fraction root sample 6; outgrowth in LB remove 5,887,943 - -1.7 5,887,976 - -0.3 5,888,048 - PS417_27275 0.22 -1.1 5,888,048 - PS417_27275 0.22 +1.5 5,888,116 + PS417_27275 0.36 +0.1 5,888,117 - PS417_27275 0.36 -0.3 5,888,176 + PS417_27275 0.48 -0.5 5,888,176 + PS417_27275 0.48 -1.3 5,888,177 - PS417_27275 0.49 +0.5 5,888,212 + PS417_27275 0.56 -1.2 5,888,263 + PS417_27275 0.66 -1.7 5,888,263 + PS417_27275 0.66 +1.2 5,888,263 + PS417_27275 0.66 +2.7 5,888,263 + PS417_27275 0.66 -0.2 5,888,264 - PS417_27275 0.66 -0.5 5,888,275 + PS417_27275 0.69 -0.5 5,888,275 + PS417_27275 0.69 +1.6 5,888,353 + PS417_27275 0.85 +0.2 5,888,354 - PS417_27275 0.85 -0.9 5,888,420 + +1.7 5,888,421 - +1.1 5,888,421 - +1.0 5,888,421 - +0.3 5,889,761 + PS417_27285 0.12 +1.3 5,889,762 - PS417_27285 0.12 +0.3 5,889,762 - PS417_27285 0.12 -1.9 5,889,762 - PS417_27285 0.12 +1.0 5,889,763 + PS417_27285 0.12 -0.3 5,889,764 - PS417_27285 0.12 -0.8 5,889,764 - PS417_27285 0.12 -1.2 5,889,764 - PS417_27285 0.12 +0.2 5,889,830 - PS417_27285 0.17 -0.5 5,889,883 + PS417_27285 0.21 -3.3 5,889,883 + PS417_27285 0.21 -1.2 5,889,883 + PS417_27285 0.21 +2.0 5,889,883 + PS417_27285 0.21 +0.5 5,889,883 + PS417_27285 0.21 +1.0 5,889,884 - PS417_27285 0.21 -0.7 5,889,884 - PS417_27285 0.21 -1.9 5,889,884 - PS417_27285 0.21 -0.4 5,889,884 - PS417_27285 0.21 -0.3 5,889,893 + PS417_27285 0.22 +0.4 5,889,893 + PS417_27285 0.22 -0.6 5,889,895 + PS417_27285 0.22 -0.7 5,889,895 + PS417_27285 0.22 -0.3 5,889,895 + PS417_27285 0.22 -0.6 5,889,896 - PS417_27285 0.22 -1.2 5,889,896 - PS417_27285 0.22 -0.2 5,890,047 + PS417_27285 0.34 -0.6 5,890,048 - PS417_27285 0.34 +0.6 5,890,050 + PS417_27285 0.34 -0.1 5,890,051 - PS417_27285 0.34 +0.0 5,890,051 - PS417_27285 0.34 -0.9 5,890,051 - PS417_27285 0.34 +1.7 5,890,051 - PS417_27285 0.34 -0.7 5,890,051 - PS417_27285 0.34 +0.4 5,890,051 - +2.3 5,890,123 + PS417_27285 0.39 -0.5 5,890,401 - PS417_27285 0.60 -0.0 5,890,401 - PS417_27285 0.60 -1.8 5,890,544 - PS417_27285 0.71 +0.4 5,890,544 - PS417_27285 0.71 +0.3
Or see this region's nucleotide sequence