Experiment: root sample 6; outgrowth in LB
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt PS417_26855 and PS417_26860 are separated by 114 nucleotides PS417_26860 and PS417_26865 are separated by 103 nucleotides PS417_26865 and PS417_26870 are separated by 133 nucleotides
PS417_26855: PS417_26855 - GMC family oxidoreductase, at 5,798,434 to 5,800,029
_26855
PS417_26860: PS417_26860 - phosphopantetheine adenylyltransferase, at 5,800,144 to 5,800,623
_26860
PS417_26865: PS417_26865 - ferredoxin, at 5,800,727 to 5,800,978
_26865
PS417_26870: PS417_26870 - 5-hydroxymethyluracil DNA glycosylase, at 5,801,112 to 5,801,924
_26870
Position (kb) 5800
5801 Strain fitness (log2 ratio) -2
-1
0
1
2 at 5799.220 kb on + strand, within PS417_26855 at 5799.220 kb on + strand, within PS417_26855 at 5799.220 kb on + strand, within PS417_26855 at 5799.220 kb on + strand, within PS417_26855 at 5799.221 kb on - strand, within PS417_26855 at 5799.368 kb on - strand, within PS417_26855 at 5799.389 kb on - strand, within PS417_26855 at 5799.389 kb on - strand, within PS417_26855 at 5799.437 kb on - strand, within PS417_26855 at 5799.437 kb on - strand, within PS417_26855 at 5799.437 kb on - strand, within PS417_26855 at 5799.631 kb on + strand, within PS417_26855 at 5799.632 kb on - strand, within PS417_26855 at 5799.646 kb on + strand, within PS417_26855 at 5799.745 kb on + strand, within PS417_26855 at 5799.746 kb on - strand, within PS417_26855 at 5799.746 kb on - strand, within PS417_26855 at 5799.973 kb on + strand at 5799.973 kb on + strand at 5800.041 kb on - strand at 5800.053 kb on + strand at 5800.053 kb on + strand at 5800.053 kb on + strand at 5800.054 kb on - strand at 5800.054 kb on - strand at 5800.054 kb on - strand at 5800.621 kb on + strand at 5801.126 kb on + strand at 5801.126 kb on + strand at 5801.127 kb on - strand at 5801.213 kb on - strand, within PS417_26870 at 5801.322 kb on + strand, within PS417_26870 at 5801.339 kb on - strand, within PS417_26870 at 5801.410 kb on + strand, within PS417_26870 at 5801.410 kb on + strand, within PS417_26870 at 5801.410 kb on + strand, within PS417_26870 at 5801.411 kb on - strand, within PS417_26870 at 5801.411 kb on - strand, within PS417_26870 at 5801.411 kb on - strand, within PS417_26870 at 5801.411 kb on - strand, within PS417_26870 at 5801.414 kb on + strand, within PS417_26870 at 5801.414 kb on + strand, within PS417_26870 at 5801.414 kb on + strand, within PS417_26870 at 5801.415 kb on - strand, within PS417_26870 at 5801.415 kb on - strand, within PS417_26870 at 5801.415 kb on - strand, within PS417_26870 at 5801.415 kb on - strand, within PS417_26870 at 5801.415 kb on - strand, within PS417_26870 at 5801.608 kb on + strand, within PS417_26870
Per-strain Table
Position Strand Gene LocusTag Fraction root sample 6; outgrowth in LB remove 5,799,220 + PS417_26855 0.49 -1.5 5,799,220 + PS417_26855 0.49 +0.3 5,799,220 + PS417_26855 0.49 +0.1 5,799,220 + PS417_26855 0.49 -0.9 5,799,221 - PS417_26855 0.49 -0.6 5,799,368 - PS417_26855 0.59 -0.9 5,799,389 - PS417_26855 0.60 -0.3 5,799,389 - PS417_26855 0.60 +0.2 5,799,437 - PS417_26855 0.63 +1.3 5,799,437 - PS417_26855 0.63 +1.0 5,799,437 - PS417_26855 0.63 -0.1 5,799,631 + PS417_26855 0.75 +0.1 5,799,632 - PS417_26855 0.75 +0.3 5,799,646 + PS417_26855 0.76 -0.4 5,799,745 + PS417_26855 0.82 +0.1 5,799,746 - PS417_26855 0.82 +0.6 5,799,746 - PS417_26855 0.82 +0.1 5,799,973 + +0.4 5,799,973 + +0.4 5,800,041 - -0.6 5,800,053 + +0.3 5,800,053 + -0.3 5,800,053 + -0.1 5,800,054 - -1.1 5,800,054 - -2.7 5,800,054 - -1.8 5,800,621 + +0.7 5,801,126 + -0.2 5,801,126 + +0.0 5,801,127 - -0.6 5,801,213 - PS417_26870 0.12 -0.1 5,801,322 + PS417_26870 0.26 -0.3 5,801,339 - PS417_26870 0.28 +0.4 5,801,410 + PS417_26870 0.37 +0.2 5,801,410 + PS417_26870 0.37 -0.7 5,801,410 + PS417_26870 0.37 -0.6 5,801,411 - PS417_26870 0.37 -0.2 5,801,411 - PS417_26870 0.37 +0.0 5,801,411 - PS417_26870 0.37 +0.0 5,801,411 - PS417_26870 0.37 -0.7 5,801,414 + PS417_26870 0.37 -1.1 5,801,414 + PS417_26870 0.37 -0.7 5,801,414 + PS417_26870 0.37 -1.4 5,801,415 - PS417_26870 0.37 -0.6 5,801,415 - PS417_26870 0.37 +0.8 5,801,415 - PS417_26870 0.37 +1.0 5,801,415 - PS417_26870 0.37 -1.0 5,801,415 - PS417_26870 0.37 +2.3 5,801,608 + PS417_26870 0.61 -0.5
Or see this region's nucleotide sequence