Experiment: root sample 6; outgrowth in LB
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt PS417_26495 and PS417_26500 are separated by 99 nucleotides PS417_26500 and PS417_26505 are separated by 326 nucleotides PS417_26505 and PS417_26510 are separated by 167 nucleotides
PS417_26495: PS417_26495 - type III secretion system effector protein exou, at 5,729,201 to 5,731,132
_26495
PS417_26500: PS417_26500 - thioesterase, at 5,731,232 to 5,731,636
_26500
PS417_26505: PS417_26505 - adenosylhomocysteinase, at 5,731,963 to 5,733,372
_26505
PS417_26510: PS417_26510 - 5,10-methylenetetrahydrofolate reductase, at 5,733,540 to 5,734,385
_26510
Position (kb) 5731
5732
5733
5734 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 5730.981 kb on - strand at 5731.233 kb on + strand at 5731.246 kb on + strand at 5731.273 kb on - strand, within PS417_26500 at 5731.372 kb on + strand, within PS417_26500 at 5731.373 kb on - strand, within PS417_26500 at 5731.373 kb on - strand, within PS417_26500 at 5731.488 kb on + strand, within PS417_26500 at 5731.488 kb on + strand, within PS417_26500 at 5731.488 kb on + strand, within PS417_26500 at 5731.489 kb on - strand, within PS417_26500 at 5731.489 kb on - strand, within PS417_26500 at 5731.489 kb on - strand, within PS417_26500 at 5731.610 kb on + strand at 5731.700 kb on + strand at 5731.710 kb on + strand at 5731.710 kb on + strand at 5731.711 kb on - strand at 5731.711 kb on - strand at 5731.711 kb on - strand at 5731.714 kb on + strand at 5731.714 kb on + strand at 5731.715 kb on - strand at 5731.715 kb on - strand at 5731.715 kb on - strand at 5731.739 kb on - strand at 5731.779 kb on + strand at 5731.946 kb on - strand at 5733.370 kb on + strand at 5733.371 kb on - strand at 5733.371 kb on - strand at 5733.504 kb on + strand at 5733.505 kb on - strand at 5733.505 kb on - strand at 5733.636 kb on + strand, within PS417_26510 at 5733.636 kb on + strand, within PS417_26510 at 5733.636 kb on + strand, within PS417_26510 at 5733.637 kb on - strand, within PS417_26510 at 5733.885 kb on + strand, within PS417_26510 at 5734.050 kb on + strand, within PS417_26510 at 5734.051 kb on - strand, within PS417_26510 at 5734.071 kb on + strand, within PS417_26510 at 5734.071 kb on + strand, within PS417_26510 at 5734.072 kb on - strand, within PS417_26510 at 5734.072 kb on - strand, within PS417_26510 at 5734.149 kb on + strand, within PS417_26510 at 5734.150 kb on - strand, within PS417_26510 at 5734.209 kb on - strand, within PS417_26510 at 5734.277 kb on + strand, within PS417_26510 at 5734.277 kb on + strand, within PS417_26510 at 5734.277 kb on + strand, within PS417_26510 at 5734.278 kb on - strand, within PS417_26510 at 5734.278 kb on - strand, within PS417_26510 at 5734.323 kb on + strand at 5734.323 kb on + strand at 5734.324 kb on - strand at 5734.324 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction root sample 6; outgrowth in LB remove 5,730,981 - -0.1 5,731,233 + -0.3 5,731,246 + -0.9 5,731,273 - PS417_26500 0.10 -0.3 5,731,372 + PS417_26500 0.35 +0.7 5,731,373 - PS417_26500 0.35 -0.2 5,731,373 - PS417_26500 0.35 -0.8 5,731,488 + PS417_26500 0.63 +1.2 5,731,488 + PS417_26500 0.63 -2.4 5,731,488 + PS417_26500 0.63 -0.0 5,731,489 - PS417_26500 0.63 +0.9 5,731,489 - PS417_26500 0.63 +0.4 5,731,489 - PS417_26500 0.63 +1.2 5,731,610 + +0.6 5,731,700 + +1.1 5,731,710 + -1.2 5,731,710 + +1.3 5,731,711 - -0.3 5,731,711 - -0.9 5,731,711 - +1.4 5,731,714 + -1.8 5,731,714 + -0.8 5,731,715 - -0.2 5,731,715 - -0.6 5,731,715 - -1.4 5,731,739 - +0.8 5,731,779 + -0.2 5,731,946 - -0.5 5,733,370 + +2.1 5,733,371 - -1.1 5,733,371 - +0.9 5,733,504 + -0.3 5,733,505 - -1.2 5,733,505 - +0.4 5,733,636 + PS417_26510 0.11 +0.4 5,733,636 + PS417_26510 0.11 +2.3 5,733,636 + PS417_26510 0.11 -2.9 5,733,637 - PS417_26510 0.11 -0.3 5,733,885 + PS417_26510 0.41 -1.0 5,734,050 + PS417_26510 0.60 +0.3 5,734,051 - PS417_26510 0.60 -0.9 5,734,071 + PS417_26510 0.63 -0.3 5,734,071 + PS417_26510 0.63 -1.6 5,734,072 - PS417_26510 0.63 +0.4 5,734,072 - PS417_26510 0.63 -1.7 5,734,149 + PS417_26510 0.72 -0.6 5,734,150 - PS417_26510 0.72 -1.1 5,734,209 - PS417_26510 0.79 -0.3 5,734,277 + PS417_26510 0.87 +0.1 5,734,277 + PS417_26510 0.87 -1.2 5,734,277 + PS417_26510 0.87 +0.4 5,734,278 - PS417_26510 0.87 -0.9 5,734,278 - PS417_26510 0.87 +0.1 5,734,323 + -2.4 5,734,323 + +0.3 5,734,324 - -0.3 5,734,324 - -0.6
Or see this region's nucleotide sequence