Experiment: root sample 6; outgrowth in LB
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt PS417_26205 and PS417_26210 are separated by 176 nucleotides PS417_26210 and PS417_26215 are separated by 195 nucleotides PS417_26215 and PS417_26220 are separated by 282 nucleotides
PS417_26205: PS417_26205 - threonine aldolase, at 5,662,984 to 5,664,024
_26205
PS417_26210: PS417_26210 - hypothetical protein, at 5,664,201 to 5,664,398
_26210
PS417_26215: PS417_26215 - ferredoxin, at 5,664,594 to 5,665,694
_26215
PS417_26220: PS417_26220 - Rieske (2Fe-2S) protein, at 5,665,977 to 5,667,272
_26220
Position (kb)
5664
5665
5666 Strain fitness (log2 ratio)
-3
-2
-1
0
1
2 at 5663.646 kb on + strand, within PS417_26205 at 5663.646 kb on + strand, within PS417_26205 at 5663.647 kb on - strand, within PS417_26205 at 5663.918 kb on - strand, within PS417_26205 at 5663.982 kb on - strand at 5664.080 kb on - strand at 5664.080 kb on - strand at 5664.083 kb on + strand at 5664.216 kb on + strand at 5664.372 kb on + strand, within PS417_26210 at 5664.484 kb on + strand at 5664.644 kb on + strand at 5664.645 kb on - strand at 5664.647 kb on - strand at 5665.192 kb on + strand, within PS417_26215 at 5665.192 kb on + strand, within PS417_26215 at 5665.193 kb on - strand, within PS417_26215 at 5665.312 kb on + strand, within PS417_26215 at 5665.313 kb on - strand, within PS417_26215 at 5665.459 kb on + strand, within PS417_26215 at 5665.460 kb on - strand, within PS417_26215 at 5665.760 kb on + strand at 5665.760 kb on + strand at 5665.760 kb on + strand at 5665.764 kb on + strand at 5665.765 kb on - strand at 5665.781 kb on + strand at 5665.781 kb on + strand at 5665.781 kb on + strand at 5665.781 kb on + strand at 5665.782 kb on - strand at 5665.809 kb on + strand at 5665.810 kb on - strand at 5665.810 kb on - strand at 5665.938 kb on - strand at 5665.997 kb on - strand at 5666.088 kb on + strand at 5666.089 kb on - strand at 5666.349 kb on + strand, within PS417_26220 at 5666.350 kb on - strand, within PS417_26220 at 5666.521 kb on - strand, within PS417_26220 at 5666.562 kb on - strand at 5666.622 kb on + strand, within PS417_26220
Per-strain Table
Position Strand Gene LocusTag Fraction root sample 6; outgrowth in LB remove 5,663,646 + PS417_26205 0.64 -1.4 5,663,646 + PS417_26205 0.64 -0.3 5,663,647 - PS417_26205 0.64 -1.2 5,663,918 - PS417_26205 0.90 -0.4 5,663,982 - -1.9 5,664,080 - +0.8 5,664,080 - -0.6 5,664,083 + +0.5 5,664,216 + -0.0 5,664,372 + PS417_26210 0.86 +2.2 5,664,484 + -0.2 5,664,644 + -3.2 5,664,645 - +1.3 5,664,647 - +0.1 5,665,192 + PS417_26215 0.54 +1.1 5,665,192 + PS417_26215 0.54 -1.8 5,665,193 - PS417_26215 0.54 -0.9 5,665,312 + PS417_26215 0.65 +2.7 5,665,313 - PS417_26215 0.65 -2.9 5,665,459 + PS417_26215 0.79 -1.5 5,665,460 - PS417_26215 0.79 -1.3 5,665,760 + -2.2 5,665,760 + -1.7 5,665,760 + -0.6 5,665,764 + -0.6 5,665,765 - +0.4 5,665,781 + -0.6 5,665,781 + -0.6 5,665,781 + -0.5 5,665,781 + -0.7 5,665,782 - +2.3 5,665,809 + -1.0 5,665,810 - +0.3 5,665,810 - +0.5 5,665,938 - -0.9 5,665,997 - -1.8 5,666,088 + -0.3 5,666,089 - -0.2 5,666,349 + PS417_26220 0.29 -0.7 5,666,350 - PS417_26220 0.29 -0.4 5,666,521 - PS417_26220 0.42 -0.2 5,666,562 - +1.0 5,666,622 + PS417_26220 0.50 -0.7
Or see this region's nucleotide sequence