Strain Fitness in Pseudomonas simiae WCS417 around PS417_26215

Experiment: root sample 6; outgrowth in LB

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPS417_26205 and PS417_26210 are separated by 176 nucleotidesPS417_26210 and PS417_26215 are separated by 195 nucleotidesPS417_26215 and PS417_26220 are separated by 282 nucleotides PS417_26205: PS417_26205 - threonine aldolase, at 5,662,984 to 5,664,024 _26205 PS417_26210: PS417_26210 - hypothetical protein, at 5,664,201 to 5,664,398 _26210 PS417_26215: PS417_26215 - ferredoxin, at 5,664,594 to 5,665,694 _26215 PS417_26220: PS417_26220 - Rieske (2Fe-2S) protein, at 5,665,977 to 5,667,272 _26220 Position (kb) 5664 5665 5666Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 5663.646 kb on + strand, within PS417_26205at 5663.646 kb on + strand, within PS417_26205at 5663.647 kb on - strand, within PS417_26205at 5663.918 kb on - strand, within PS417_26205at 5663.982 kb on - strandat 5664.080 kb on - strandat 5664.080 kb on - strandat 5664.083 kb on + strandat 5664.216 kb on + strandat 5664.372 kb on + strand, within PS417_26210at 5664.484 kb on + strandat 5664.644 kb on + strandat 5664.645 kb on - strandat 5664.647 kb on - strandat 5665.192 kb on + strand, within PS417_26215at 5665.192 kb on + strand, within PS417_26215at 5665.193 kb on - strand, within PS417_26215at 5665.312 kb on + strand, within PS417_26215at 5665.313 kb on - strand, within PS417_26215at 5665.459 kb on + strand, within PS417_26215at 5665.460 kb on - strand, within PS417_26215at 5665.760 kb on + strandat 5665.760 kb on + strandat 5665.760 kb on + strandat 5665.764 kb on + strandat 5665.765 kb on - strandat 5665.781 kb on + strandat 5665.781 kb on + strandat 5665.781 kb on + strandat 5665.781 kb on + strandat 5665.782 kb on - strandat 5665.809 kb on + strandat 5665.810 kb on - strandat 5665.810 kb on - strandat 5665.938 kb on - strandat 5665.997 kb on - strandat 5666.088 kb on + strandat 5666.089 kb on - strandat 5666.349 kb on + strand, within PS417_26220at 5666.350 kb on - strand, within PS417_26220at 5666.521 kb on - strand, within PS417_26220at 5666.562 kb on - strandat 5666.622 kb on + strand, within PS417_26220

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Per-strain Table

Position Strand Gene LocusTag Fraction root sample 6; outgrowth in LB
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5,663,646 + PS417_26205 0.64 -1.4
5,663,646 + PS417_26205 0.64 -0.3
5,663,647 - PS417_26205 0.64 -1.2
5,663,918 - PS417_26205 0.90 -0.4
5,663,982 - -1.9
5,664,080 - +0.8
5,664,080 - -0.6
5,664,083 + +0.5
5,664,216 + -0.0
5,664,372 + PS417_26210 0.86 +2.2
5,664,484 + -0.2
5,664,644 + -3.2
5,664,645 - +1.3
5,664,647 - +0.1
5,665,192 + PS417_26215 0.54 +1.1
5,665,192 + PS417_26215 0.54 -1.8
5,665,193 - PS417_26215 0.54 -0.9
5,665,312 + PS417_26215 0.65 +2.7
5,665,313 - PS417_26215 0.65 -2.9
5,665,459 + PS417_26215 0.79 -1.5
5,665,460 - PS417_26215 0.79 -1.3
5,665,760 + -2.2
5,665,760 + -1.7
5,665,760 + -0.6
5,665,764 + -0.6
5,665,765 - +0.4
5,665,781 + -0.6
5,665,781 + -0.6
5,665,781 + -0.5
5,665,781 + -0.7
5,665,782 - +2.3
5,665,809 + -1.0
5,665,810 - +0.3
5,665,810 - +0.5
5,665,938 - -0.9
5,665,997 - -1.8
5,666,088 + -0.3
5,666,089 - -0.2
5,666,349 + PS417_26220 0.29 -0.7
5,666,350 - PS417_26220 0.29 -0.4
5,666,521 - PS417_26220 0.42 -0.2
5,666,562 - +1.0
5,666,622 + PS417_26220 0.50 -0.7

Or see this region's nucleotide sequence