Strain Fitness in Pseudomonas simiae WCS417 around PS417_26050

Experiment: root sample 6; outgrowth in LB

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPS417_26040 and PS417_26045 are separated by 36 nucleotidesPS417_26045 and PS417_26050 are separated by 127 nucleotidesPS417_26050 and PS417_26055 are separated by 245 nucleotides PS417_26040: PS417_26040 - malate synthase, at 5,626,432 to 5,628,609 _26040 PS417_26045: PS417_26045 - hypothetical protein, at 5,628,646 to 5,629,089 _26045 PS417_26050: PS417_26050 - response regulator, at 5,629,217 to 5,629,663 _26050 PS417_26055: PS417_26055 - cyclic nucleotide-binding protein, at 5,629,909 to 5,631,831 _26055 Position (kb) 5629 5630Strain fitness (log2 ratio) -2 -1 0 1 2 3 4 5 6 7at 5628.248 kb on - strand, within PS417_26040at 5628.552 kb on + strandat 5628.608 kb on - strandat 5628.645 kb on - strandat 5628.675 kb on - strandat 5628.685 kb on - strandat 5628.696 kb on + strand, within PS417_26045at 5628.696 kb on + strandat 5628.696 kb on + strand, within PS417_26045at 5628.697 kb on - strand, within PS417_26045at 5628.700 kb on + strand, within PS417_26045at 5628.701 kb on - strand, within PS417_26045at 5628.759 kb on + strand, within PS417_26045at 5628.759 kb on + strand, within PS417_26045at 5628.760 kb on - strand, within PS417_26045at 5628.763 kb on + strand, within PS417_26045at 5628.764 kb on - strand, within PS417_26045at 5628.768 kb on + strand, within PS417_26045at 5628.768 kb on + strand, within PS417_26045at 5628.769 kb on - strand, within PS417_26045at 5628.846 kb on + strand, within PS417_26045at 5628.847 kb on - strand, within PS417_26045at 5628.851 kb on - strand, within PS417_26045at 5628.914 kb on + strand, within PS417_26045at 5628.927 kb on + strand, within PS417_26045at 5628.928 kb on - strand, within PS417_26045at 5628.928 kb on - strand, within PS417_26045at 5628.931 kb on + strand, within PS417_26045at 5628.932 kb on - strand, within PS417_26045at 5628.932 kb on - strand, within PS417_26045at 5628.955 kb on + strand, within PS417_26045at 5628.955 kb on + strand, within PS417_26045at 5628.956 kb on - strand, within PS417_26045at 5628.958 kb on + strand, within PS417_26045at 5628.959 kb on - strand, within PS417_26045at 5629.026 kb on - strand, within PS417_26045at 5629.071 kb on + strandat 5629.071 kb on + strandat 5629.090 kb on - strandat 5629.094 kb on + strandat 5629.095 kb on - strandat 5629.197 kb on + strandat 5629.354 kb on + strand, within PS417_26050at 5629.388 kb on + strand, within PS417_26050at 5629.388 kb on + strand, within PS417_26050at 5629.388 kb on + strand, within PS417_26050at 5629.389 kb on - strand, within PS417_26050at 5629.389 kb on - strand, within PS417_26050at 5629.389 kb on - strand, within PS417_26050at 5629.389 kb on - strand, within PS417_26050at 5629.592 kb on + strand, within PS417_26050at 5629.663 kb on + strandat 5629.663 kb on + strandat 5629.664 kb on - strandat 5629.682 kb on - strandat 5629.682 kb on - strandat 5629.682 kb on - strandat 5629.682 kb on - strandat 5629.682 kb on - strandat 5629.768 kb on - strandat 5629.784 kb on - strandat 5629.791 kb on + strandat 5629.830 kb on - strandat 5629.830 kb on - strandat 5629.830 kb on - strandat 5629.835 kb on + strandat 5629.835 kb on + strandat 5629.835 kb on + strandat 5629.836 kb on - strandat 5629.908 kb on + strandat 5629.908 kb on + strandat 5629.914 kb on + strandat 5629.914 kb on + strandat 5629.963 kb on - strandat 5630.054 kb on + strandat 5630.055 kb on - strandat 5630.062 kb on + strandat 5630.062 kb on + strandat 5630.062 kb on + strandat 5630.062 kb on + strandat 5630.063 kb on - strandat 5630.063 kb on - strandat 5630.063 kb on - strandat 5630.063 kb on - strandat 5630.116 kb on + strand, within PS417_26055at 5630.116 kb on + strand, within PS417_26055at 5630.116 kb on + strandat 5630.116 kb on + strand, within PS417_26055at 5630.116 kb on + strand, within PS417_26055at 5630.117 kb on - strand, within PS417_26055at 5630.117 kb on - strand, within PS417_26055at 5630.117 kb on - strand, within PS417_26055at 5630.117 kb on - strand, within PS417_26055at 5630.117 kb on - strand, within PS417_26055at 5630.414 kb on - strand, within PS417_26055at 5630.637 kb on + strand, within PS417_26055at 5630.637 kb on + strand, within PS417_26055at 5630.637 kb on + strand, within PS417_26055at 5630.638 kb on - strand, within PS417_26055at 5630.638 kb on - strand, within PS417_26055at 5630.638 kb on - strand, within PS417_26055at 5630.638 kb on - strand, within PS417_26055at 5630.638 kb on - strand, within PS417_26055at 5630.638 kb on - strand, within PS417_26055at 5630.638 kb on - strand, within PS417_26055at 5630.638 kb on - strand, within PS417_26055

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Per-strain Table

Position Strand Gene LocusTag Fraction root sample 6; outgrowth in LB
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5,628,248 - PS417_26040 0.83 -0.6
5,628,552 + -0.0
5,628,608 - +1.1
5,628,645 - +1.3
5,628,675 - +0.4
5,628,685 - +0.7
5,628,696 + PS417_26045 0.11 +6.9
5,628,696 + +1.7
5,628,696 + PS417_26045 0.11 +0.3
5,628,697 - PS417_26045 0.11 -1.0
5,628,700 + PS417_26045 0.12 +0.0
5,628,701 - PS417_26045 0.12 +0.8
5,628,759 + PS417_26045 0.25 +3.3
5,628,759 + PS417_26045 0.25 -1.1
5,628,760 - PS417_26045 0.26 -0.0
5,628,763 + PS417_26045 0.26 -0.6
5,628,764 - PS417_26045 0.27 -1.6
5,628,768 + PS417_26045 0.27 -0.2
5,628,768 + PS417_26045 0.27 +0.5
5,628,769 - PS417_26045 0.28 +0.3
5,628,846 + PS417_26045 0.45 -0.1
5,628,847 - PS417_26045 0.45 -0.8
5,628,851 - PS417_26045 0.46 +0.3
5,628,914 + PS417_26045 0.60 +0.9
5,628,927 + PS417_26045 0.63 +0.5
5,628,928 - PS417_26045 0.64 +0.4
5,628,928 - PS417_26045 0.64 +1.8
5,628,931 + PS417_26045 0.64 -1.8
5,628,932 - PS417_26045 0.64 -0.3
5,628,932 - PS417_26045 0.64 +1.9
5,628,955 + PS417_26045 0.70 -0.4
5,628,955 + PS417_26045 0.70 -1.6
5,628,956 - PS417_26045 0.70 -1.1
5,628,958 + PS417_26045 0.70 +1.1
5,628,959 - PS417_26045 0.70 -1.0
5,629,026 - PS417_26045 0.86 -0.2
5,629,071 + +1.4
5,629,071 + +0.8
5,629,090 - +1.5
5,629,094 + +0.3
5,629,095 - +0.9
5,629,197 + -0.2
5,629,354 + PS417_26050 0.31 +0.6
5,629,388 + PS417_26050 0.38 +2.7
5,629,388 + PS417_26050 0.38 +1.1
5,629,388 + PS417_26050 0.38 +1.1
5,629,389 - PS417_26050 0.38 +1.1
5,629,389 - PS417_26050 0.38 +0.7
5,629,389 - PS417_26050 0.38 +0.2
5,629,389 - PS417_26050 0.38 +2.0
5,629,592 + PS417_26050 0.84 +2.1
5,629,663 + -0.5
5,629,663 + +1.1
5,629,664 - +0.2
5,629,682 - +0.4
5,629,682 - -1.2
5,629,682 - +1.3
5,629,682 - +0.4
5,629,682 - +0.4
5,629,768 - +1.3
5,629,784 - +0.9
5,629,791 + -0.6
5,629,830 - -1.2
5,629,830 - +0.2
5,629,830 - -0.7
5,629,835 + +1.3
5,629,835 + +0.9
5,629,835 + +0.0
5,629,836 - +2.9
5,629,908 + -0.2
5,629,908 + -0.4
5,629,914 + +0.7
5,629,914 + +0.8
5,629,963 - -0.5
5,630,054 + +0.9
5,630,055 - +0.2
5,630,062 + +1.4
5,630,062 + -0.3
5,630,062 + +0.3
5,630,062 + +0.6
5,630,063 - +0.2
5,630,063 - +1.5
5,630,063 - +0.5
5,630,063 - -0.2
5,630,116 + PS417_26055 0.11 -0.3
5,630,116 + PS417_26055 0.11 +0.0
5,630,116 + +0.8
5,630,116 + PS417_26055 0.11 +2.1
5,630,116 + PS417_26055 0.11 +1.4
5,630,117 - PS417_26055 0.11 -2.5
5,630,117 - PS417_26055 0.11 -0.6
5,630,117 - PS417_26055 0.11 +0.8
5,630,117 - PS417_26055 0.11 -1.4
5,630,117 - PS417_26055 0.11 -1.2
5,630,414 - PS417_26055 0.26 -2.5
5,630,637 + PS417_26055 0.38 +0.5
5,630,637 + PS417_26055 0.38 +0.4
5,630,637 + PS417_26055 0.38 -0.7
5,630,638 - PS417_26055 0.38 -1.6
5,630,638 - PS417_26055 0.38 -1.1
5,630,638 - PS417_26055 0.38 +1.3
5,630,638 - PS417_26055 0.38 -0.5
5,630,638 - PS417_26055 0.38 +1.0
5,630,638 - PS417_26055 0.38 -1.6
5,630,638 - PS417_26055 0.38 -0.4
5,630,638 - PS417_26055 0.38 +1.6

Or see this region's nucleotide sequence