Experiment: root sample 6; outgrowth in LB
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt PS417_26040 and PS417_26045 are separated by 36 nucleotides PS417_26045 and PS417_26050 are separated by 127 nucleotides PS417_26050 and PS417_26055 are separated by 245 nucleotides
PS417_26040: PS417_26040 - malate synthase, at 5,626,432 to 5,628,609
_26040
PS417_26045: PS417_26045 - hypothetical protein, at 5,628,646 to 5,629,089
_26045
PS417_26050: PS417_26050 - response regulator, at 5,629,217 to 5,629,663
_26050
PS417_26055: PS417_26055 - cyclic nucleotide-binding protein, at 5,629,909 to 5,631,831
_26055
Position (kb)
5629
5630 Strain fitness (log2 ratio)
-2
-1
0
1
2
3
4
5
6
7 at 5628.248 kb on - strand, within PS417_26040 at 5628.552 kb on + strand at 5628.608 kb on - strand at 5628.645 kb on - strand at 5628.675 kb on - strand at 5628.685 kb on - strand at 5628.696 kb on + strand, within PS417_26045 at 5628.696 kb on + strand at 5628.696 kb on + strand, within PS417_26045 at 5628.697 kb on - strand, within PS417_26045 at 5628.700 kb on + strand, within PS417_26045 at 5628.701 kb on - strand, within PS417_26045 at 5628.759 kb on + strand, within PS417_26045 at 5628.759 kb on + strand, within PS417_26045 at 5628.760 kb on - strand, within PS417_26045 at 5628.763 kb on + strand, within PS417_26045 at 5628.764 kb on - strand, within PS417_26045 at 5628.768 kb on + strand, within PS417_26045 at 5628.768 kb on + strand, within PS417_26045 at 5628.769 kb on - strand, within PS417_26045 at 5628.846 kb on + strand, within PS417_26045 at 5628.847 kb on - strand, within PS417_26045 at 5628.851 kb on - strand, within PS417_26045 at 5628.914 kb on + strand, within PS417_26045 at 5628.927 kb on + strand, within PS417_26045 at 5628.928 kb on - strand, within PS417_26045 at 5628.928 kb on - strand, within PS417_26045 at 5628.931 kb on + strand, within PS417_26045 at 5628.932 kb on - strand, within PS417_26045 at 5628.932 kb on - strand, within PS417_26045 at 5628.955 kb on + strand, within PS417_26045 at 5628.955 kb on + strand, within PS417_26045 at 5628.956 kb on - strand, within PS417_26045 at 5628.958 kb on + strand, within PS417_26045 at 5628.959 kb on - strand, within PS417_26045 at 5629.026 kb on - strand, within PS417_26045 at 5629.071 kb on + strand at 5629.071 kb on + strand at 5629.090 kb on - strand at 5629.094 kb on + strand at 5629.095 kb on - strand at 5629.197 kb on + strand at 5629.354 kb on + strand, within PS417_26050 at 5629.388 kb on + strand, within PS417_26050 at 5629.388 kb on + strand, within PS417_26050 at 5629.388 kb on + strand, within PS417_26050 at 5629.389 kb on - strand, within PS417_26050 at 5629.389 kb on - strand, within PS417_26050 at 5629.389 kb on - strand, within PS417_26050 at 5629.389 kb on - strand, within PS417_26050 at 5629.592 kb on + strand, within PS417_26050 at 5629.663 kb on + strand at 5629.663 kb on + strand at 5629.664 kb on - strand at 5629.682 kb on - strand at 5629.682 kb on - strand at 5629.682 kb on - strand at 5629.682 kb on - strand at 5629.682 kb on - strand at 5629.768 kb on - strand at 5629.784 kb on - strand at 5629.791 kb on + strand at 5629.830 kb on - strand at 5629.830 kb on - strand at 5629.830 kb on - strand at 5629.835 kb on + strand at 5629.835 kb on + strand at 5629.835 kb on + strand at 5629.836 kb on - strand at 5629.908 kb on + strand at 5629.908 kb on + strand at 5629.914 kb on + strand at 5629.914 kb on + strand at 5629.963 kb on - strand at 5630.054 kb on + strand at 5630.055 kb on - strand at 5630.062 kb on + strand at 5630.062 kb on + strand at 5630.062 kb on + strand at 5630.062 kb on + strand at 5630.063 kb on - strand at 5630.063 kb on - strand at 5630.063 kb on - strand at 5630.063 kb on - strand at 5630.116 kb on + strand, within PS417_26055 at 5630.116 kb on + strand, within PS417_26055 at 5630.116 kb on + strand at 5630.116 kb on + strand, within PS417_26055 at 5630.116 kb on + strand, within PS417_26055 at 5630.117 kb on - strand, within PS417_26055 at 5630.117 kb on - strand, within PS417_26055 at 5630.117 kb on - strand, within PS417_26055 at 5630.117 kb on - strand, within PS417_26055 at 5630.117 kb on - strand, within PS417_26055 at 5630.414 kb on - strand, within PS417_26055 at 5630.637 kb on + strand, within PS417_26055 at 5630.637 kb on + strand, within PS417_26055 at 5630.637 kb on + strand, within PS417_26055 at 5630.638 kb on - strand, within PS417_26055 at 5630.638 kb on - strand, within PS417_26055 at 5630.638 kb on - strand, within PS417_26055 at 5630.638 kb on - strand, within PS417_26055 at 5630.638 kb on - strand, within PS417_26055 at 5630.638 kb on - strand, within PS417_26055 at 5630.638 kb on - strand, within PS417_26055 at 5630.638 kb on - strand, within PS417_26055
Per-strain Table
Position Strand Gene LocusTag Fraction root sample 6; outgrowth in LB remove 5,628,248 - PS417_26040 0.83 -0.6 5,628,552 + -0.0 5,628,608 - +1.1 5,628,645 - +1.3 5,628,675 - +0.4 5,628,685 - +0.7 5,628,696 + PS417_26045 0.11 +6.9 5,628,696 + +1.7 5,628,696 + PS417_26045 0.11 +0.3 5,628,697 - PS417_26045 0.11 -1.0 5,628,700 + PS417_26045 0.12 +0.0 5,628,701 - PS417_26045 0.12 +0.8 5,628,759 + PS417_26045 0.25 +3.3 5,628,759 + PS417_26045 0.25 -1.1 5,628,760 - PS417_26045 0.26 -0.0 5,628,763 + PS417_26045 0.26 -0.6 5,628,764 - PS417_26045 0.27 -1.6 5,628,768 + PS417_26045 0.27 -0.2 5,628,768 + PS417_26045 0.27 +0.5 5,628,769 - PS417_26045 0.28 +0.3 5,628,846 + PS417_26045 0.45 -0.1 5,628,847 - PS417_26045 0.45 -0.8 5,628,851 - PS417_26045 0.46 +0.3 5,628,914 + PS417_26045 0.60 +0.9 5,628,927 + PS417_26045 0.63 +0.5 5,628,928 - PS417_26045 0.64 +0.4 5,628,928 - PS417_26045 0.64 +1.8 5,628,931 + PS417_26045 0.64 -1.8 5,628,932 - PS417_26045 0.64 -0.3 5,628,932 - PS417_26045 0.64 +1.9 5,628,955 + PS417_26045 0.70 -0.4 5,628,955 + PS417_26045 0.70 -1.6 5,628,956 - PS417_26045 0.70 -1.1 5,628,958 + PS417_26045 0.70 +1.1 5,628,959 - PS417_26045 0.70 -1.0 5,629,026 - PS417_26045 0.86 -0.2 5,629,071 + +1.4 5,629,071 + +0.8 5,629,090 - +1.5 5,629,094 + +0.3 5,629,095 - +0.9 5,629,197 + -0.2 5,629,354 + PS417_26050 0.31 +0.6 5,629,388 + PS417_26050 0.38 +2.7 5,629,388 + PS417_26050 0.38 +1.1 5,629,388 + PS417_26050 0.38 +1.1 5,629,389 - PS417_26050 0.38 +1.1 5,629,389 - PS417_26050 0.38 +0.7 5,629,389 - PS417_26050 0.38 +0.2 5,629,389 - PS417_26050 0.38 +2.0 5,629,592 + PS417_26050 0.84 +2.1 5,629,663 + -0.5 5,629,663 + +1.1 5,629,664 - +0.2 5,629,682 - +0.4 5,629,682 - -1.2 5,629,682 - +1.3 5,629,682 - +0.4 5,629,682 - +0.4 5,629,768 - +1.3 5,629,784 - +0.9 5,629,791 + -0.6 5,629,830 - -1.2 5,629,830 - +0.2 5,629,830 - -0.7 5,629,835 + +1.3 5,629,835 + +0.9 5,629,835 + +0.0 5,629,836 - +2.9 5,629,908 + -0.2 5,629,908 + -0.4 5,629,914 + +0.7 5,629,914 + +0.8 5,629,963 - -0.5 5,630,054 + +0.9 5,630,055 - +0.2 5,630,062 + +1.4 5,630,062 + -0.3 5,630,062 + +0.3 5,630,062 + +0.6 5,630,063 - +0.2 5,630,063 - +1.5 5,630,063 - +0.5 5,630,063 - -0.2 5,630,116 + PS417_26055 0.11 -0.3 5,630,116 + PS417_26055 0.11 +0.0 5,630,116 + +0.8 5,630,116 + PS417_26055 0.11 +2.1 5,630,116 + PS417_26055 0.11 +1.4 5,630,117 - PS417_26055 0.11 -2.5 5,630,117 - PS417_26055 0.11 -0.6 5,630,117 - PS417_26055 0.11 +0.8 5,630,117 - PS417_26055 0.11 -1.4 5,630,117 - PS417_26055 0.11 -1.2 5,630,414 - PS417_26055 0.26 -2.5 5,630,637 + PS417_26055 0.38 +0.5 5,630,637 + PS417_26055 0.38 +0.4 5,630,637 + PS417_26055 0.38 -0.7 5,630,638 - PS417_26055 0.38 -1.6 5,630,638 - PS417_26055 0.38 -1.1 5,630,638 - PS417_26055 0.38 +1.3 5,630,638 - PS417_26055 0.38 -0.5 5,630,638 - PS417_26055 0.38 +1.0 5,630,638 - PS417_26055 0.38 -1.6 5,630,638 - PS417_26055 0.38 -0.4 5,630,638 - PS417_26055 0.38 +1.6
Or see this region's nucleotide sequence