Strain Fitness in Pseudomonas simiae WCS417 around PS417_02570

Experiment: root sample 6; outgrowth in LB

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntPS417_02560 and PS417_02565 are separated by 309 nucleotidesPS417_02565 and PS417_02570 are separated by 28 nucleotidesPS417_02570 and PS417_02575 are separated by 36 nucleotidesPS417_02575 and PS417_02580 are separated by 18 nucleotides PS417_02560: PS417_02560 - 23S rRNA methyltransferase, at 584,576 to 585,331 _02560 PS417_02565: PS417_02565 - 30S ribosomal protein S6, at 585,641 to 586,063 _02565 PS417_02570: PS417_02570 - 30S ribosomal protein S18, at 586,092 to 586,322 _02570 PS417_02575: PS417_02575 - membrane protein, at 586,359 to 587,252 _02575 PS417_02580: PS417_02580 - 50S ribosomal protein L9, at 587,271 to 587,717 _02580 Position (kb) 586 587Strain fitness (log2 ratio) -1 0 1 2at 585.125 kb on + strand, within PS417_02560at 585.126 kb on - strand, within PS417_02560at 585.126 kb on - strand, within PS417_02560at 585.330 kb on - strandat 585.388 kb on + strandat 585.463 kb on + strandat 586.884 kb on + strand, within PS417_02575at 587.121 kb on + strand, within PS417_02575at 587.121 kb on + strand, within PS417_02575at 587.121 kb on + strand, within PS417_02575at 587.121 kb on + strand, within PS417_02575

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction root sample 6; outgrowth in LB
remove
585,125 + PS417_02560 0.73 +0.1
585,126 - PS417_02560 0.73 -0.2
585,126 - PS417_02560 0.73 +1.1
585,330 - -1.4
585,388 + +1.1
585,463 + -1.2
586,884 + PS417_02575 0.59 -1.7
587,121 + PS417_02575 0.85 +2.3
587,121 + PS417_02575 0.85 -0.9
587,121 + PS417_02575 0.85 +0.8
587,121 + PS417_02575 0.85 +0.0

Or see this region's nucleotide sequence