Experiment: root sample 6; outgrowth in LB
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt PS417_25800 and PS417_25805 overlap by 4 nucleotides PS417_25805 and PS417_25810 overlap by 4 nucleotides PS417_25810 and PS417_25815 are separated by 97 nucleotides PS417_25815 and PS417_25820 overlap by 1 nucleotides
PS417_25800: PS417_25800 - molecular chaperone SurA, at 5,571,530 to 5,572,867
_25800
PS417_25805: PS417_25805 - 4-hydroxythreonine-4-phosphate dehydrogenase, at 5,572,864 to 5,573,853
_25805
PS417_25810: PS417_25810 - ribosomal RNA small subunit methyltransferase A, at 5,573,850 to 5,574,662
_25810
PS417_25815: PS417_25815 - magnesium transporter ApaG, at 5,574,760 to 5,575,140
_25815
PS417_25820: PS417_25820 - diadenosine tetraphosphatase, at 5,575,140 to 5,575,991
_25820
Position (kb) 5573
5574
5575 Strain fitness (log2 ratio) -1
0
1
2 at 5573.849 kb on + strand at 5574.675 kb on - strand at 5574.675 kb on - strand at 5575.002 kb on + strand, within PS417_25815 at 5575.003 kb on - strand, within PS417_25815 at 5575.003 kb on - strand, within PS417_25815 at 5575.006 kb on + strand, within PS417_25815 at 5575.006 kb on + strand, within PS417_25815 at 5575.006 kb on + strand, within PS417_25815 at 5575.006 kb on + strand, within PS417_25815 at 5575.007 kb on - strand, within PS417_25815
Per-strain Table
Position Strand Gene LocusTag Fraction root sample 6; outgrowth in LB remove 5,573,849 + +0.9 5,574,675 - -0.5 5,574,675 - -0.0 5,575,002 + PS417_25815 0.64 +0.7 5,575,003 - PS417_25815 0.64 -1.7 5,575,003 - PS417_25815 0.64 -0.8 5,575,006 + PS417_25815 0.65 +1.2 5,575,006 + PS417_25815 0.65 -0.6 5,575,006 + PS417_25815 0.65 +1.3 5,575,006 + PS417_25815 0.65 +2.4 5,575,007 - PS417_25815 0.65 -0.2
Or see this region's nucleotide sequence