Strain Fitness in Pseudomonas simiae WCS417 around PS417_25800

Experiment: root sample 6; outgrowth in LB

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPS417_25795 and PS417_25800 overlap by 26 nucleotidesPS417_25800 and PS417_25805 overlap by 4 nucleotidesPS417_25805 and PS417_25810 overlap by 4 nucleotides PS417_25795: PS417_25795 - LPS biosynthesis protein, at 5,568,745 to 5,571,555 _25795 PS417_25800: PS417_25800 - molecular chaperone SurA, at 5,571,530 to 5,572,867 _25800 PS417_25805: PS417_25805 - 4-hydroxythreonine-4-phosphate dehydrogenase, at 5,572,864 to 5,573,853 _25805 PS417_25810: PS417_25810 - ribosomal RNA small subunit methyltransferase A, at 5,573,850 to 5,574,662 _25810 Position (kb) 5571 5572 5573Strain fitness (log2 ratio) -1 0 1at 5573.849 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction root sample 6; outgrowth in LB
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5,573,849 + +0.9

Or see this region's nucleotide sequence