Experiment: root sample 6; outgrowth in LB
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt PS417_25725 and PS417_25730 are separated by 70 nucleotides PS417_25730 and PS417_25735 overlap by 4 nucleotides PS417_25735 and PS417_25740 are separated by 84 nucleotides
PS417_25725: PS417_25725 - anthranilate synthase component I, at 5,553,238 to 5,554,719
_25725
PS417_25730: PS417_25730 - phosphoglycolate phosphatase, at 5,554,790 to 5,555,608
_25730
PS417_25735: PS417_25735 - ribulose-phosphate 3-epimerase, at 5,555,605 to 5,556,279
_25735
PS417_25740: PS417_25740 - alcohol dehydrogenase, at 5,556,364 to 5,557,512
_25740
Position (kb) 5555
5556
5557 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3 at 5554.680 kb on - strand at 5554.723 kb on - strand at 5554.744 kb on + strand at 5554.755 kb on + strand at 5554.901 kb on + strand, within PS417_25730 at 5554.902 kb on - strand, within PS417_25730 at 5554.998 kb on + strand, within PS417_25730 at 5554.999 kb on - strand, within PS417_25730 at 5555.004 kb on + strand, within PS417_25730 at 5555.015 kb on + strand, within PS417_25730 at 5555.015 kb on + strand, within PS417_25730 at 5555.015 kb on + strand, within PS417_25730 at 5555.095 kb on + strand, within PS417_25730 at 5555.181 kb on + strand, within PS417_25730 at 5556.320 kb on + strand at 5556.320 kb on + strand at 5556.321 kb on - strand at 5556.321 kb on - strand at 5556.321 kb on - strand at 5556.321 kb on - strand at 5556.322 kb on + strand at 5556.323 kb on - strand at 5556.353 kb on + strand at 5556.353 kb on + strand at 5556.353 kb on + strand at 5556.368 kb on + strand at 5556.368 kb on + strand at 5556.369 kb on - strand at 5556.660 kb on - strand at 5556.660 kb on - strand, within PS417_25740 at 5556.660 kb on - strand, within PS417_25740 at 5556.828 kb on - strand, within PS417_25740 at 5556.828 kb on - strand, within PS417_25740 at 5556.912 kb on - strand, within PS417_25740 at 5557.019 kb on + strand, within PS417_25740 at 5557.019 kb on + strand, within PS417_25740 at 5557.191 kb on - strand, within PS417_25740 at 5557.268 kb on + strand, within PS417_25740
Per-strain Table
Position Strand Gene LocusTag Fraction root sample 6; outgrowth in LB remove 5,554,680 - -0.3 5,554,723 - -0.4 5,554,744 + -0.7 5,554,755 + -2.2 5,554,901 + PS417_25730 0.14 -3.1 5,554,902 - PS417_25730 0.14 +2.7 5,554,998 + PS417_25730 0.25 -0.5 5,554,999 - PS417_25730 0.26 +2.8 5,555,004 + PS417_25730 0.26 +1.8 5,555,015 + PS417_25730 0.27 +0.7 5,555,015 + PS417_25730 0.27 -1.4 5,555,015 + PS417_25730 0.27 +1.7 5,555,095 + PS417_25730 0.37 -1.4 5,555,181 + PS417_25730 0.48 -0.4 5,556,320 + +1.9 5,556,320 + -0.4 5,556,321 - -0.3 5,556,321 - -0.5 5,556,321 - -0.5 5,556,321 - +0.0 5,556,322 + +0.1 5,556,323 - +2.4 5,556,353 + +0.5 5,556,353 + +0.6 5,556,353 + +0.4 5,556,368 + +0.9 5,556,368 + -0.2 5,556,369 - -0.5 5,556,660 - +0.9 5,556,660 - PS417_25740 0.26 +0.1 5,556,660 - PS417_25740 0.26 -0.1 5,556,828 - PS417_25740 0.40 -1.0 5,556,828 - PS417_25740 0.40 +0.0 5,556,912 - PS417_25740 0.48 +0.0 5,557,019 + PS417_25740 0.57 -0.7 5,557,019 + PS417_25740 0.57 -0.6 5,557,191 - PS417_25740 0.72 +1.2 5,557,268 + PS417_25740 0.79 -0.4
Or see this region's nucleotide sequence