Experiment: root sample 6; outgrowth in LB
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt PS417_25680 and PS417_25685 are separated by 46 nucleotides PS417_25685 and PS417_25690 are separated by 116 nucleotides PS417_25690 and PS417_25695 are separated by 61 nucleotides PS417_25695 and PS417_25700 are separated by 247 nucleotides
PS417_25680: PS417_25680 - short-chain dehydrogenase, at 5,546,575 to 5,547,363
_25680
PS417_25685: PS417_25685 - zinc-binding protein, at 5,547,410 to 5,547,748
_25685
PS417_25690: PS417_25690 - 2-octaprenyl-3-methyl-6-methoxy-1,4-benzoquinol hydroxylase, at 5,547,865 to 5,548,512
_25690
PS417_25695: PS417_25695 - peroxiredoxin, at 5,548,574 to 5,548,996
_25695
PS417_25700: PS417_25700 - cyclic AMP receptor protein, at 5,549,244 to 5,549,888
_25700
Position (kb) 5547
5548
5549 Strain fitness (log2 ratio) -2
-1
0
1
2
3
4 at 5547.028 kb on + strand at 5547.028 kb on + strand, within PS417_25680 at 5547.029 kb on - strand, within PS417_25680 at 5547.029 kb on - strand, within PS417_25680 at 5547.032 kb on - strand at 5547.032 kb on - strand, within PS417_25680 at 5547.046 kb on + strand, within PS417_25680 at 5547.046 kb on + strand, within PS417_25680 at 5547.046 kb on + strand, within PS417_25680 at 5547.047 kb on - strand, within PS417_25680 at 5547.047 kb on - strand, within PS417_25680 at 5547.047 kb on - strand, within PS417_25680 at 5547.047 kb on - strand, within PS417_25680 at 5547.217 kb on + strand, within PS417_25680 at 5547.217 kb on + strand, within PS417_25680 at 5547.218 kb on - strand, within PS417_25680 at 5547.218 kb on - strand, within PS417_25680 at 5547.349 kb on + strand at 5547.350 kb on - strand at 5547.373 kb on + strand at 5547.374 kb on - strand at 5547.394 kb on + strand at 5547.395 kb on - strand at 5547.447 kb on + strand, within PS417_25685 at 5547.447 kb on + strand, within PS417_25685 at 5547.448 kb on - strand, within PS417_25685 at 5547.465 kb on - strand, within PS417_25685 at 5547.465 kb on - strand, within PS417_25685 at 5547.577 kb on + strand, within PS417_25685 at 5547.578 kb on - strand, within PS417_25685 at 5547.595 kb on + strand, within PS417_25685 at 5547.595 kb on + strand, within PS417_25685 at 5547.595 kb on + strand, within PS417_25685 at 5547.595 kb on + strand, within PS417_25685 at 5547.595 kb on + strand, within PS417_25685 at 5547.596 kb on - strand, within PS417_25685 at 5547.703 kb on + strand, within PS417_25685 at 5547.703 kb on + strand, within PS417_25685 at 5547.703 kb on + strand, within PS417_25685 at 5547.704 kb on - strand, within PS417_25685 at 5547.704 kb on - strand, within PS417_25685 at 5547.704 kb on - strand at 5547.763 kb on + strand at 5548.597 kb on - strand at 5548.651 kb on - strand, within PS417_25695 at 5548.651 kb on - strand, within PS417_25695 at 5548.742 kb on + strand, within PS417_25695 at 5548.743 kb on - strand, within PS417_25695 at 5548.743 kb on - strand, within PS417_25695 at 5549.034 kb on - strand at 5549.199 kb on + strand at 5549.215 kb on - strand at 5549.215 kb on - strand at 5549.237 kb on + strand at 5549.237 kb on + strand at 5549.237 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction root sample 6; outgrowth in LB remove 5,547,028 + +1.2 5,547,028 + PS417_25680 0.57 +2.2 5,547,029 - PS417_25680 0.58 +1.2 5,547,029 - PS417_25680 0.58 +0.4 5,547,032 - +3.2 5,547,032 - PS417_25680 0.58 -0.7 5,547,046 + PS417_25680 0.60 +1.0 5,547,046 + PS417_25680 0.60 -1.2 5,547,046 + PS417_25680 0.60 -1.2 5,547,047 - PS417_25680 0.60 +0.0 5,547,047 - PS417_25680 0.60 -0.6 5,547,047 - PS417_25680 0.60 +0.1 5,547,047 - PS417_25680 0.60 +0.7 5,547,217 + PS417_25680 0.81 +1.9 5,547,217 + PS417_25680 0.81 +0.1 5,547,218 - PS417_25680 0.81 -1.6 5,547,218 - PS417_25680 0.81 +1.6 5,547,349 + -0.4 5,547,350 - +0.9 5,547,373 + -0.2 5,547,374 - +0.1 5,547,394 + +0.9 5,547,395 - +2.6 5,547,447 + PS417_25685 0.11 +1.5 5,547,447 + PS417_25685 0.11 +0.9 5,547,448 - PS417_25685 0.11 -1.8 5,547,465 - PS417_25685 0.16 -0.4 5,547,465 - PS417_25685 0.16 +1.8 5,547,577 + PS417_25685 0.49 -1.4 5,547,578 - PS417_25685 0.50 -0.8 5,547,595 + PS417_25685 0.55 -0.4 5,547,595 + PS417_25685 0.55 +1.0 5,547,595 + PS417_25685 0.55 +0.6 5,547,595 + PS417_25685 0.55 +1.3 5,547,595 + PS417_25685 0.55 -0.8 5,547,596 - PS417_25685 0.55 -1.5 5,547,703 + PS417_25685 0.86 -0.3 5,547,703 + PS417_25685 0.86 -0.7 5,547,703 + PS417_25685 0.86 -1.1 5,547,704 - PS417_25685 0.87 -0.1 5,547,704 - PS417_25685 0.87 -0.7 5,547,704 - +1.0 5,547,763 + -1.9 5,548,597 - +0.2 5,548,651 - PS417_25695 0.18 -0.7 5,548,651 - PS417_25695 0.18 -1.1 5,548,742 + PS417_25695 0.40 -1.2 5,548,743 - PS417_25695 0.40 -1.1 5,548,743 - PS417_25695 0.40 -0.7 5,549,034 - +0.8 5,549,199 + -1.5 5,549,215 - +1.1 5,549,215 - -1.4 5,549,237 + +1.3 5,549,237 + +3.9 5,549,237 + +1.2
Or see this region's nucleotide sequence