Strain Fitness in Pseudomonas simiae WCS417 around PS417_25655

Experiment: root sample 6; outgrowth in LB

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPS417_25650 and PS417_25655 are separated by 77 nucleotidesPS417_25655 and PS417_25660 are separated by 165 nucleotides PS417_25650: PS417_25650 - anhydro-N-acetylmuramic acid kinase, at 5,541,213 to 5,542,304 _25650 PS417_25655: PS417_25655 - iron--sulfur cluster insertion protein ErpA, at 5,542,382 to 5,542,732 _25655 PS417_25660: PS417_25660 - N-acetyl-gamma-glutamyl-phosphate reductase, at 5,542,898 to 5,543,932 _25660 Position (kb) 5542 5543Strain fitness (log2 ratio) -2 -1 0 1at 5541.576 kb on - strand, within PS417_25650at 5541.576 kb on - strand, within PS417_25650at 5541.803 kb on - strand, within PS417_25650at 5542.369 kb on + strandat 5542.769 kb on - strandat 5542.769 kb on - strandat 5542.823 kb on + strandat 5542.824 kb on - strandat 5542.824 kb on - strandat 5542.836 kb on - strandat 5542.900 kb on - strandat 5542.900 kb on - strandat 5542.900 kb on - strandat 5543.238 kb on - strand, within PS417_25660

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Per-strain Table

Position Strand Gene LocusTag Fraction root sample 6; outgrowth in LB
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5,541,576 - PS417_25650 0.33 -0.8
5,541,576 - PS417_25650 0.33 +0.1
5,541,803 - PS417_25650 0.54 -2.1
5,542,369 + -0.6
5,542,769 - +0.0
5,542,769 - +0.6
5,542,823 + -1.7
5,542,824 - +0.0
5,542,824 - +1.1
5,542,836 - +0.1
5,542,900 - -1.4
5,542,900 - -1.8
5,542,900 - +0.3
5,543,238 - PS417_25660 0.33 -0.5

Or see this region's nucleotide sequence