Experiment: root sample 6; outgrowth in LB
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt PS417_02530 and PS417_02535 are separated by 144 nucleotides PS417_02535 and PS417_02540 are separated by 152 nucleotides PS417_02540 and PS417_02545 are separated by 152 nucleotides PS417_02545 and PS417_02550 are separated by 152 nucleotides PS417_02550 and PS417_02555 are separated by 225 nucleotides
PS417_02530: PS417_02530 - iron ABC transporter substrate-binding protein, at 579,753 to 580,778
_02530
PS417_02535: PS417_02535 - tRNA-Leu, at 580,923 to 581,009
_02535
PS417_02540: PS417_02540 - tRNA-Leu, at 581,162 to 581,248
_02540
PS417_02545: PS417_02545 - tRNA-Leu, at 581,401 to 581,487
_02545
PS417_02550: PS417_02550 - tRNA-Leu, at 581,640 to 581,726
_02550
PS417_02555: PS417_02555 - exoribonuclease R, at 581,952 to 584,579
_02555
Position (kb) 581
582 Strain fitness (log2 ratio) -1
0
1
2
3 at 580.658 kb on - strand, within PS417_02530 at 580.687 kb on + strand at 581.765 kb on - strand at 581.767 kb on - strand at 581.781 kb on - strand at 581.867 kb on + strand at 581.868 kb on - strand at 581.909 kb on + strand at 581.919 kb on + strand at 581.919 kb on + strand at 581.930 kb on + strand at 581.931 kb on - strand at 581.931 kb on - strand at 581.931 kb on - strand at 581.931 kb on - strand at 581.931 kb on - strand at 582.171 kb on + strand at 582.171 kb on + strand at 582.171 kb on + strand at 582.171 kb on + strand at 582.171 kb on + strand at 582.172 kb on - strand at 582.172 kb on - strand at 582.172 kb on - strand at 582.189 kb on + strand at 582.189 kb on + strand at 582.398 kb on - strand, within PS417_02555 at 582.429 kb on + strand, within PS417_02555 at 582.429 kb on + strand, within PS417_02555 at 582.509 kb on + strand, within PS417_02555 at 582.612 kb on + strand, within PS417_02555 at 582.612 kb on + strand, within PS417_02555 at 582.612 kb on + strand, within PS417_02555 at 582.612 kb on + strand, within PS417_02555 at 582.612 kb on + strand, within PS417_02555 at 582.613 kb on - strand, within PS417_02555 at 582.613 kb on - strand, within PS417_02555 at 582.613 kb on - strand, within PS417_02555 at 582.613 kb on - strand, within PS417_02555 at 582.654 kb on + strand, within PS417_02555 at 582.654 kb on + strand, within PS417_02555 at 582.654 kb on + strand, within PS417_02555 at 582.654 kb on + strand, within PS417_02555 at 582.654 kb on + strand, within PS417_02555 at 582.655 kb on - strand, within PS417_02555 at 582.655 kb on - strand, within PS417_02555
Per-strain Table
Position Strand Gene LocusTag Fraction root sample 6; outgrowth in LB remove 580,658 - PS417_02530 0.88 +1.6 580,687 + -0.3 581,765 - +0.4 581,767 - -0.9 581,781 - -0.2 581,867 + -0.8 581,868 - -0.3 581,909 + +0.0 581,919 + -0.6 581,919 + +0.3 581,930 + +2.0 581,931 - +0.2 581,931 - +1.2 581,931 - +1.1 581,931 - +0.6 581,931 - +0.1 582,171 + -0.8 582,171 + +0.4 582,171 + +1.2 582,171 + +1.7 582,171 + -0.2 582,172 - +1.8 582,172 - +0.2 582,172 - +1.8 582,189 + -0.0 582,189 + -1.3 582,398 - PS417_02555 0.17 +0.2 582,429 + PS417_02555 0.18 +1.0 582,429 + PS417_02555 0.18 -1.0 582,509 + PS417_02555 0.21 +0.1 582,612 + PS417_02555 0.25 -0.4 582,612 + PS417_02555 0.25 +0.3 582,612 + PS417_02555 0.25 +2.6 582,612 + PS417_02555 0.25 +3.2 582,612 + PS417_02555 0.25 +1.4 582,613 - PS417_02555 0.25 +1.3 582,613 - PS417_02555 0.25 +0.1 582,613 - PS417_02555 0.25 +2.3 582,613 - PS417_02555 0.25 +0.6 582,654 + PS417_02555 0.27 -0.4 582,654 + PS417_02555 0.27 +1.4 582,654 + PS417_02555 0.27 +0.9 582,654 + PS417_02555 0.27 -1.3 582,654 + PS417_02555 0.27 +1.2 582,655 - PS417_02555 0.27 +2.2 582,655 - PS417_02555 0.27 +0.2
Or see this region's nucleotide sequence