Strain Fitness in Pseudomonas simiae WCS417 around PS417_25595

Experiment: root sample 6; outgrowth in LB

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPS417_25585 and PS417_25590 overlap by 1 nucleotidesPS417_25590 and PS417_25595 are separated by 117 nucleotidesPS417_25595 and PS417_25600 are separated by 9 nucleotidesPS417_25600 and PS417_25605 are separated by 45 nucleotidesPS417_25605 and PS417_25610 are separated by 161 nucleotidesPS417_25610 and PS417_25615 are separated by 26 nucleotidesPS417_25615 and PS417_25620 are separated by 24 nucleotides PS417_25585: PS417_25585 - 50S ribosomal protein L1, at 5,533,178 to 5,533,873 _25585 PS417_25590: PS417_25590 - 50S ribosomal protein L11, at 5,533,873 to 5,534,304 _25590 PS417_25595: PS417_25595 - antitermination protein NusG, at 5,534,422 to 5,534,955 _25595 PS417_25600: PS417_25600 - preprotein translocase subunit SecE, at 5,534,965 to 5,535,333 _25600 PS417_25605: PS417_25605 - tRNA-Trp, at 5,535,379 to 5,535,454 _25605 PS417_25610: PS417_25610 - tRNA-Thr, at 5,535,616 to 5,535,691 _25610 PS417_25615: PS417_25615 - tRNA-Gly, at 5,535,718 to 5,535,791 _25615 PS417_25620: PS417_25620 - tRNA-Tyr, at 5,535,816 to 5,535,900 _25620 Position (kb) 5534 5535Strain fitness (log2 ratio) -2 -1 0 1 2at 5535.518 kb on - strandat 5535.551 kb on - strandat 5535.551 kb on - strandat 5535.593 kb on - strandat 5535.593 kb on - strandat 5535.601 kb on - strandat 5535.615 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction root sample 6; outgrowth in LB
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5,535,518 - -0.3
5,535,551 - -2.0
5,535,551 - -1.8
5,535,593 - -0.6
5,535,593 - +2.6
5,535,601 - -0.2
5,535,615 - +0.4

Or see this region's nucleotide sequence