Strain Fitness in Pseudomonas simiae WCS417 around PS417_25565

Experiment: root sample 6; outgrowth in LB

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPS417_25555 and PS417_25560 are separated by 118 nucleotidesPS417_25560 and PS417_25565 are separated by 217 nucleotidesPS417_25565 and PS417_25570 are separated by 64 nucleotides PS417_25555: PS417_25555 - 30S ribosomal protein S7, at 5,522,299 to 5,522,769 _25555 PS417_25560: PS417_25560 - 30S ribosomal protein S12, at 5,522,888 to 5,523,259 _25560 PS417_25565: PS417_25565 - DNA-directed RNA polymerase subunit beta', at 5,523,477 to 5,527,676 _25565 PS417_25570: PS417_25570 - DNA-directed RNA polymerase subunit beta, at 5,527,741 to 5,531,814 _25570 Position (kb) 5523 5524 5525 5526 5527 5528Strain fitness (log2 ratio) -2 -1 0 1at 5523.535 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction root sample 6; outgrowth in LB
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5,523,535 - -2.7

Or see this region's nucleotide sequence