Strain Fitness in Pseudomonas simiae WCS417 around PS417_25545

Experiment: root sample 6; outgrowth in LB

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPS417_25535 and PS417_25540 are separated by 81 nucleotidesPS417_25540 and PS417_25545 are separated by 159 nucleotidesPS417_25545 and PS417_25550 are separated by 30 nucleotides PS417_25535: PS417_25535 - 50S ribosomal protein L3, at 5,517,751 to 5,518,386 _25535 PS417_25540: PS417_25540 - 30S ribosomal protein S10, at 5,518,468 to 5,518,779 _25540 PS417_25545: PS417_25545 - elongation factor Tu, at 5,518,939 to 5,520,132 _25545 PS417_25550: PS417_25550 - elongation factor G, at 5,520,163 to 5,522,268 _25550 Position (kb) 5518 5519 5520 5521Strain fitness (log2 ratio) -1 0 1 2at 5518.940 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction root sample 6; outgrowth in LB
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5,518,940 + +1.9

Or see this region's nucleotide sequence