Strain Fitness in Pseudomonas simiae WCS417 around PS417_25535

Experiment: root sample 6; outgrowth in LB

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPS417_25520 and PS417_25525 are separated by 14 nucleotidesPS417_25525 and PS417_25530 overlap by 4 nucleotidesPS417_25530 and PS417_25535 are separated by 12 nucleotidesPS417_25535 and PS417_25540 are separated by 81 nucleotidesPS417_25540 and PS417_25545 are separated by 159 nucleotides PS417_25520: PS417_25520 - 50S ribosomal protein L2, at 5,516,001 to 5,516,825 _25520 PS417_25525: PS417_25525 - 50S ribosomal protein L23, at 5,516,840 to 5,517,139 _25525 PS417_25530: PS417_25530 - 50S ribosomal protein L4, at 5,517,136 to 5,517,738 _25530 PS417_25535: PS417_25535 - 50S ribosomal protein L3, at 5,517,751 to 5,518,386 _25535 PS417_25540: PS417_25540 - 30S ribosomal protein S10, at 5,518,468 to 5,518,779 _25540 PS417_25545: PS417_25545 - elongation factor Tu, at 5,518,939 to 5,520,132 _25545 Position (kb) 5517 5518 5519Strain fitness (log2 ratio) -1 0 1 2at 5518.940 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction root sample 6; outgrowth in LB
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5,518,940 + +1.9

Or see this region's nucleotide sequence