Experiment: root sample 6; outgrowth in LB
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt PS417_25290 and PS417_25295 are separated by 130 nucleotides PS417_25295 and PS417_25300 are separated by 138 nucleotides PS417_25300 and PS417_25305 are separated by 1 nucleotides
PS417_25290: PS417_25290 - hypothetical protein, at 5,477,134 to 5,477,481
_25290
PS417_25295: PS417_25295 - hypothetical protein, at 5,477,612 to 5,478,214
_25295
PS417_25300: PS417_25300 - methionine ABC transporter ATP-binding protein, at 5,478,353 to 5,479,063
_25300
PS417_25305: PS417_25305 - peptide ABC transporter permease, at 5,479,065 to 5,480,330
_25305
Position (kb) 5478
5479
5480 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3 at 5477.489 kb on - strand at 5477.572 kb on - strand at 5477.894 kb on - strand, within PS417_25295 at 5477.894 kb on - strand, within PS417_25295 at 5478.054 kb on - strand, within PS417_25295 at 5479.068 kb on + strand at 5479.068 kb on + strand at 5479.068 kb on + strand at 5479.069 kb on - strand at 5479.069 kb on - strand at 5479.270 kb on - strand, within PS417_25305 at 5479.536 kb on + strand, within PS417_25305 at 5479.536 kb on + strand, within PS417_25305 at 5479.536 kb on + strand, within PS417_25305 at 5479.537 kb on - strand, within PS417_25305 at 5479.573 kb on + strand, within PS417_25305 at 5479.906 kb on + strand, within PS417_25305 at 5479.906 kb on + strand, within PS417_25305 at 5479.906 kb on + strand, within PS417_25305 at 5480.047 kb on + strand, within PS417_25305 at 5480.048 kb on - strand, within PS417_25305 at 5480.048 kb on - strand, within PS417_25305 at 5480.048 kb on - strand, within PS417_25305
Per-strain Table
Position Strand Gene LocusTag Fraction root sample 6; outgrowth in LB remove 5,477,489 - +0.6 5,477,572 - -0.9 5,477,894 - PS417_25295 0.47 -0.4 5,477,894 - PS417_25295 0.47 -0.6 5,478,054 - PS417_25295 0.73 +0.1 5,479,068 + -0.5 5,479,068 + +1.2 5,479,068 + +0.1 5,479,069 - +0.6 5,479,069 - +0.0 5,479,270 - PS417_25305 0.16 +1.2 5,479,536 + PS417_25305 0.37 +2.8 5,479,536 + PS417_25305 0.37 +0.1 5,479,536 + PS417_25305 0.37 -1.5 5,479,537 - PS417_25305 0.37 +1.4 5,479,573 + PS417_25305 0.40 +0.1 5,479,906 + PS417_25305 0.66 -2.8 5,479,906 + PS417_25305 0.66 -0.3 5,479,906 + PS417_25305 0.66 +0.9 5,480,047 + PS417_25305 0.78 +0.4 5,480,048 - PS417_25305 0.78 +1.2 5,480,048 - PS417_25305 0.78 -3.0 5,480,048 - PS417_25305 0.78 +1.4
Or see this region's nucleotide sequence