Experiment: root sample 6; outgrowth in LB
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt PS417_25255 and PS417_25260 are separated by 15 nucleotides PS417_25260 and PS417_25265 are separated by 48 nucleotides PS417_25265 and PS417_25270 overlap by 4 nucleotides PS417_25270 and PS417_25275 are separated by 140 nucleotides
PS417_25255: PS417_25255 - 3,4-dihydroxy-2-butanone 4-phosphate synthase, at 5,471,449 to 5,472,540
_25255
PS417_25260: PS417_25260 - riboflavin synthase subunit alpha, at 5,472,556 to 5,473,218
_25260
PS417_25265: PS417_25265 - diaminohydroxyphosphoribosylaminopyrimidine deaminase, at 5,473,267 to 5,474,403
_25265
PS417_25270: PS417_25270 - NrdR family transcriptional regulator, at 5,474,400 to 5,474,864
_25270
PS417_25275: PS417_25275 - hypothetical protein, at 5,475,005 to 5,475,460
_25275
Position (kb) 5473
5474
5475 Strain fitness (log2 ratio) -2
-1
0
1
2
3 at 5473.269 kb on - strand at 5473.269 kb on - strand at 5473.270 kb on + strand at 5474.495 kb on - strand, within PS417_25270 at 5474.495 kb on - strand, within PS417_25270 at 5474.495 kb on - strand, within PS417_25270 at 5474.495 kb on - strand, within PS417_25270 at 5474.495 kb on - strand, within PS417_25270 at 5474.725 kb on - strand, within PS417_25270 at 5474.883 kb on - strand at 5474.883 kb on - strand at 5474.883 kb on - strand at 5474.935 kb on - strand at 5474.939 kb on + strand at 5474.939 kb on + strand at 5474.940 kb on - strand at 5474.940 kb on - strand at 5474.941 kb on + strand at 5474.942 kb on - strand at 5474.942 kb on - strand at 5474.943 kb on + strand at 5474.943 kb on + strand at 5474.943 kb on + strand at 5474.943 kb on + strand at 5474.944 kb on - strand at 5474.944 kb on - strand at 5474.944 kb on - strand at 5474.944 kb on - strand at 5474.953 kb on - strand at 5474.955 kb on + strand at 5474.956 kb on - strand at 5474.956 kb on - strand at 5475.002 kb on + strand at 5475.002 kb on + strand at 5475.002 kb on + strand at 5475.003 kb on - strand at 5475.003 kb on - strand at 5475.003 kb on - strand at 5475.267 kb on + strand, within PS417_25275 at 5475.267 kb on + strand, within PS417_25275 at 5475.268 kb on - strand, within PS417_25275
Per-strain Table
Position Strand Gene LocusTag Fraction root sample 6; outgrowth in LB remove 5,473,269 - -0.3 5,473,269 - -1.0 5,473,270 + -1.2 5,474,495 - PS417_25270 0.20 -1.0 5,474,495 - PS417_25270 0.20 +1.3 5,474,495 - PS417_25270 0.20 -0.8 5,474,495 - PS417_25270 0.20 +0.0 5,474,495 - PS417_25270 0.20 -1.3 5,474,725 - PS417_25270 0.70 -0.2 5,474,883 - -0.1 5,474,883 - +1.8 5,474,883 - -1.0 5,474,935 - +0.0 5,474,939 + +0.2 5,474,939 + +1.4 5,474,940 - +0.6 5,474,940 - +0.5 5,474,941 + -2.5 5,474,942 - +0.5 5,474,942 - -0.8 5,474,943 + -1.9 5,474,943 + +1.9 5,474,943 + +2.9 5,474,943 + -1.0 5,474,944 - -0.6 5,474,944 - -0.9 5,474,944 - -0.9 5,474,944 - -1.5 5,474,953 - -0.5 5,474,955 + +1.9 5,474,956 - -0.5 5,474,956 - +0.2 5,475,002 + -0.4 5,475,002 + +0.6 5,475,002 + +0.1 5,475,003 - -1.0 5,475,003 - +1.4 5,475,003 - -1.3 5,475,267 + PS417_25275 0.57 -0.8 5,475,267 + PS417_25275 0.57 -0.3 5,475,268 - PS417_25275 0.58 -0.3
Or see this region's nucleotide sequence