Strain Fitness in Pseudomonas simiae WCS417 around PS417_25260

Experiment: root sample 6; outgrowth in LB

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPS417_25255 and PS417_25260 are separated by 15 nucleotidesPS417_25260 and PS417_25265 are separated by 48 nucleotides PS417_25255: PS417_25255 - 3,4-dihydroxy-2-butanone 4-phosphate synthase, at 5,471,449 to 5,472,540 _25255 PS417_25260: PS417_25260 - riboflavin synthase subunit alpha, at 5,472,556 to 5,473,218 _25260 PS417_25265: PS417_25265 - diaminohydroxyphosphoribosylaminopyrimidine deaminase, at 5,473,267 to 5,474,403 _25265 Position (kb) 5472 5473 5474Strain fitness (log2 ratio) -1 0 1at 5473.269 kb on - strandat 5473.269 kb on - strandat 5473.270 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction root sample 6; outgrowth in LB
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5,473,269 - -0.3
5,473,269 - -1.0
5,473,270 + -1.2

Or see this region's nucleotide sequence