Strain Fitness in Pseudomonas simiae WCS417 around PS417_25250

Experiment: root sample 6; outgrowth in LB

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntPS417_25240 and PS417_25245 are separated by 18 nucleotidesPS417_25245 and PS417_25250 overlap by 4 nucleotidesPS417_25250 and PS417_25255 are separated by 90 nucleotides PS417_25240: PS417_25240 - thiamine monophosphate kinase, at 5,469,401 to 5,470,366 _25240 PS417_25245: PS417_25245 - antitermination protein NusB, at 5,470,385 to 5,470,885 _25245 PS417_25250: PS417_25250 - 6,7-dimethyl-8-ribityllumazine synthase, at 5,470,882 to 5,471,358 _25250 PS417_25255: PS417_25255 - 3,4-dihydroxy-2-butanone 4-phosphate synthase, at 5,471,449 to 5,472,540 _25255 Position (kb) 5470 5471 5472Strain fitness (log2 ratio) -1 0 1at 5470.396 kb on - strandat 5471.373 kb on - strand

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction root sample 6; outgrowth in LB
remove
5,470,396 - -0.8
5,471,373 - -1.2

Or see this region's nucleotide sequence