Experiment: root sample 6; outgrowth in LB
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt PS417_24755 and PS417_24760 overlap by 4 nucleotides PS417_24760 and PS417_24765 are separated by 21 nucleotides PS417_24765 and PS417_24770 overlap by 4 nucleotides
PS417_24755: PS417_24755 - phosphoesterase, at 5,370,076 to 5,371,392
_24755
PS417_24760: PS417_24760 - ATP-dependent protease, at 5,371,389 to 5,371,979
_24760
PS417_24765: PS417_24765 - membrane protein, at 5,372,001 to 5,372,717
_24765
PS417_24770: PS417_24770 - murein hydrolase transporter LrgA, at 5,372,714 to 5,373,067
_24770
Position (kb) 5371
5372 Strain fitness (log2 ratio) -1
0
1
2
3 at 5370.395 kb on - strand, within PS417_24755 at 5370.395 kb on - strand, within PS417_24755 at 5370.406 kb on + strand, within PS417_24755 at 5370.407 kb on - strand, within PS417_24755 at 5370.456 kb on + strand, within PS417_24755 at 5370.547 kb on + strand, within PS417_24755 at 5370.548 kb on - strand, within PS417_24755 at 5370.698 kb on + strand, within PS417_24755 at 5370.741 kb on + strand, within PS417_24755 at 5370.899 kb on + strand, within PS417_24755 at 5370.900 kb on - strand, within PS417_24755 at 5371.382 kb on - strand at 5371.387 kb on + strand at 5371.387 kb on + strand at 5371.388 kb on - strand at 5371.388 kb on - strand at 5371.391 kb on - strand at 5371.391 kb on - strand at 5371.391 kb on - strand at 5371.507 kb on + strand, within PS417_24760 at 5371.980 kb on - strand at 5371.980 kb on - strand at 5372.003 kb on - strand at 5372.173 kb on - strand, within PS417_24765 at 5372.191 kb on + strand, within PS417_24765 at 5372.394 kb on + strand, within PS417_24765 at 5372.406 kb on - strand, within PS417_24765 at 5372.531 kb on - strand, within PS417_24765 at 5372.639 kb on - strand, within PS417_24765
Per-strain Table
Position Strand Gene LocusTag Fraction root sample 6; outgrowth in LB remove 5,370,395 - PS417_24755 0.24 -1.2 5,370,395 - PS417_24755 0.24 -0.8 5,370,406 + PS417_24755 0.25 +3.2 5,370,407 - PS417_24755 0.25 +0.1 5,370,456 + PS417_24755 0.29 -0.0 5,370,547 + PS417_24755 0.36 +0.7 5,370,548 - PS417_24755 0.36 -0.8 5,370,698 + PS417_24755 0.47 -1.2 5,370,741 + PS417_24755 0.50 -1.3 5,370,899 + PS417_24755 0.62 -0.4 5,370,900 - PS417_24755 0.63 -0.8 5,371,382 - -1.6 5,371,387 + -1.2 5,371,387 + -1.0 5,371,388 - -0.0 5,371,388 - +0.8 5,371,391 - +0.9 5,371,391 - -0.0 5,371,391 - +1.4 5,371,507 + PS417_24760 0.20 -0.3 5,371,980 - -0.5 5,371,980 - +0.2 5,372,003 - -1.5 5,372,173 - PS417_24765 0.24 -1.3 5,372,191 + PS417_24765 0.26 +1.2 5,372,394 + PS417_24765 0.55 -0.0 5,372,406 - PS417_24765 0.56 +1.5 5,372,531 - PS417_24765 0.74 -0.5 5,372,639 - PS417_24765 0.89 -0.4
Or see this region's nucleotide sequence