Strain Fitness in Pseudomonas simiae WCS417 around PS417_24695

Experiment: root sample 6; outgrowth in LB

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPS417_24690 and PS417_24695 are separated by 2 nucleotidesPS417_24695 and PS417_24700 overlap by 1 nucleotidesPS417_24700 and PS417_24705 are separated by 84 nucleotides PS417_24690: PS417_24690 - lipoyl synthase, at 5,357,668 to 5,358,693 _24690 PS417_24695: PS417_24695 - lipoate--protein ligase, at 5,358,696 to 5,359,343 _24695 PS417_24700: PS417_24700 - hypothetical protein, at 5,359,343 to 5,359,618 _24700 PS417_24705: PS417_24705 - D-alanyl-D-alanine carboxypeptidase, at 5,359,703 to 5,360,860 _24705 Position (kb) 5358 5359 5360Strain fitness (log2 ratio) -2 -1 0 1 2at 5358.694 kb on - strandat 5358.694 kb on - strandat 5359.641 kb on - strandat 5359.702 kb on - strandat 5359.702 kb on - strandat 5360.279 kb on - strand, within PS417_24705at 5360.283 kb on + strand, within PS417_24705at 5360.283 kb on + strand, within PS417_24705

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Per-strain Table

Position Strand Gene LocusTag Fraction root sample 6; outgrowth in LB
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5,358,694 - -0.5
5,358,694 - +2.4
5,359,641 - -1.6
5,359,702 - -1.7
5,359,702 - +1.4
5,360,279 - PS417_24705 0.50 -0.5
5,360,283 + PS417_24705 0.50 -1.7
5,360,283 + PS417_24705 0.50 -1.8

Or see this region's nucleotide sequence