Strain Fitness in Pseudomonas simiae WCS417 around PS417_24665

Experiment: root sample 6; outgrowth in LB

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPS417_24660 and PS417_24665 are separated by 88 nucleotidesPS417_24665 and PS417_24670 are separated by 39 nucleotides PS417_24660: PS417_24660 - leucine--tRNA ligase, at 5,350,304 to 5,352,910 _24660 PS417_24665: PS417_24665 - lipoprotein, at 5,352,999 to 5,353,604 _24665 PS417_24670: PS417_24670 - DNA polymerase III subunit delta, at 5,353,644 to 5,354,681 _24670 Position (kb) 5352 5353 5354Strain fitness (log2 ratio) -1 0 1at 5353.602 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction root sample 6; outgrowth in LB
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5,353,602 + -0.5

Or see this region's nucleotide sequence