Strain Fitness in Pseudomonas simiae WCS417 around PS417_24635

Experiment: root sample 6; outgrowth in LB

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPS417_24630 and PS417_24635 overlap by 8 nucleotidesPS417_24635 and PS417_24640 are separated by 41 nucleotidesPS417_24640 and PS417_24645 are separated by 8 nucleotides PS417_24630: PS417_24630 - ATP-binding protein, at 5,344,868 to 5,345,872 _24630 PS417_24635: PS417_24635 - rRNA maturation factor, at 5,345,865 to 5,346,323 _24635 PS417_24640: PS417_24640 - magnesium transporter, at 5,346,365 to 5,347,204 _24640 PS417_24645: PS417_24645 - acyltransferase, at 5,347,213 to 5,348,736 _24645 Position (kb) 5345 5346 5347Strain fitness (log2 ratio) -1 0 1at 5345.123 kb on + strand, within PS417_24630at 5345.453 kb on + strand, within PS417_24630at 5345.537 kb on + strand, within PS417_24630at 5345.813 kb on + strandat 5346.956 kb on + strand, within PS417_24640at 5346.956 kb on + strand, within PS417_24640

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Per-strain Table

Position Strand Gene LocusTag Fraction root sample 6; outgrowth in LB
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5,345,123 + PS417_24630 0.25 -0.7
5,345,453 + PS417_24630 0.58 +0.4
5,345,537 + PS417_24630 0.67 -0.0
5,345,813 + +0.1
5,346,956 + PS417_24640 0.70 -0.1
5,346,956 + PS417_24640 0.70 +0.3

Or see this region's nucleotide sequence