Experiment: root sample 6; outgrowth in LB
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt PS417_24505 and PS417_24510 are separated by 160 nucleotides PS417_24510 and PS417_24515 are separated by 89 nucleotides PS417_24515 and PS417_24520 are separated by 224 nucleotides PS417_24520 and PS417_24525 are separated by 25 nucleotides
PS417_24505: PS417_24505 - membrane protein, at 5,318,943 to 5,319,839
_24505
PS417_24510: PS417_24510 - AsnC family transcriptional regulator, at 5,320,000 to 5,320,461
_24510
PS417_24515: PS417_24515 - acyl carrier protein, at 5,320,551 to 5,320,727
_24515
PS417_24520: PS417_24520 - DNA polymerase III subunit epsilon, at 5,320,952 to 5,321,563
_24520
PS417_24525: PS417_24525 - nuclease, at 5,321,589 to 5,322,065
_24525
Position (kb) 5320
5321 Strain fitness (log2 ratio) -2
-1
0
1
2 at 5319.764 kb on - strand at 5319.764 kb on - strand at 5319.764 kb on - strand at 5319.767 kb on + strand at 5319.768 kb on - strand at 5319.768 kb on - strand at 5319.784 kb on + strand at 5319.784 kb on + strand at 5319.784 kb on + strand at 5319.785 kb on - strand at 5319.850 kb on + strand at 5319.851 kb on - strand at 5319.871 kb on + strand at 5319.871 kb on + strand at 5319.871 kb on + strand at 5319.876 kb on + strand at 5319.898 kb on + strand at 5319.928 kb on - strand at 5319.946 kb on + strand at 5319.957 kb on - strand at 5320.009 kb on + strand at 5320.009 kb on + strand at 5320.009 kb on + strand at 5320.058 kb on - strand, within PS417_24510 at 5320.216 kb on - strand, within PS417_24510 at 5320.216 kb on - strand, within PS417_24510 at 5320.238 kb on - strand, within PS417_24510 at 5320.326 kb on + strand, within PS417_24510 at 5320.327 kb on - strand, within PS417_24510 at 5320.542 kb on + strand at 5320.542 kb on + strand at 5320.542 kb on + strand at 5320.542 kb on + strand at 5320.542 kb on + strand at 5320.542 kb on + strand at 5320.542 kb on + strand at 5320.543 kb on - strand at 5320.543 kb on - strand at 5320.765 kb on - strand at 5320.821 kb on + strand at 5320.822 kb on - strand at 5320.825 kb on + strand at 5320.826 kb on - strand at 5320.826 kb on - strand at 5320.869 kb on + strand at 5320.869 kb on + strand at 5320.870 kb on - strand at 5320.871 kb on + strand at 5320.871 kb on + strand at 5320.871 kb on + strand at 5320.872 kb on - strand at 5320.872 kb on - strand at 5321.151 kb on + strand, within PS417_24520 at 5321.151 kb on + strand, within PS417_24520 at 5321.265 kb on + strand, within PS417_24520 at 5321.265 kb on + strand, within PS417_24520 at 5321.265 kb on + strand, within PS417_24520 at 5321.266 kb on - strand, within PS417_24520 at 5321.554 kb on + strand at 5321.554 kb on + strand at 5321.554 kb on + strand at 5321.555 kb on - strand at 5321.555 kb on - strand at 5321.555 kb on - strand at 5321.555 kb on - strand at 5321.590 kb on + strand at 5321.595 kb on - strand at 5321.674 kb on + strand, within PS417_24525
Per-strain Table
Position Strand Gene LocusTag Fraction root sample 6; outgrowth in LB remove 5,319,764 - -1.8 5,319,764 - +0.4 5,319,764 - -0.2 5,319,767 + +1.2 5,319,768 - -1.5 5,319,768 - +1.3 5,319,784 + +0.0 5,319,784 + +0.1 5,319,784 + -0.2 5,319,785 - +0.4 5,319,850 + +0.4 5,319,851 - -0.3 5,319,871 + -0.9 5,319,871 + +1.3 5,319,871 + +0.4 5,319,876 + +0.9 5,319,898 + -0.7 5,319,928 - +0.5 5,319,946 + +0.4 5,319,957 - +0.2 5,320,009 + +0.3 5,320,009 + +0.4 5,320,009 + +0.9 5,320,058 - PS417_24510 0.13 -1.1 5,320,216 - PS417_24510 0.47 +0.6 5,320,216 - PS417_24510 0.47 -1.1 5,320,238 - PS417_24510 0.52 -0.4 5,320,326 + PS417_24510 0.71 -0.9 5,320,327 - PS417_24510 0.71 -0.3 5,320,542 + -1.3 5,320,542 + -0.2 5,320,542 + +0.9 5,320,542 + -0.9 5,320,542 + +1.1 5,320,542 + -0.2 5,320,542 + -0.5 5,320,543 - -0.2 5,320,543 - +0.1 5,320,765 - +1.1 5,320,821 + +0.6 5,320,822 - +1.8 5,320,825 + -1.7 5,320,826 - -1.0 5,320,826 - +2.7 5,320,869 + -1.7 5,320,869 + +0.8 5,320,870 - -1.1 5,320,871 + -0.6 5,320,871 + +1.0 5,320,871 + +0.7 5,320,872 - -2.5 5,320,872 - +0.0 5,321,151 + PS417_24520 0.33 -0.0 5,321,151 + PS417_24520 0.33 -1.2 5,321,265 + PS417_24520 0.51 +0.0 5,321,265 + PS417_24520 0.51 +1.6 5,321,265 + PS417_24520 0.51 -1.6 5,321,266 - PS417_24520 0.51 +0.6 5,321,554 + -0.1 5,321,554 + -1.2 5,321,554 + -1.9 5,321,555 - +1.8 5,321,555 - -0.0 5,321,555 - -0.6 5,321,555 - -0.0 5,321,590 + -0.8 5,321,595 - -0.1 5,321,674 + PS417_24525 0.18 +0.3
Or see this region's nucleotide sequence