Experiment: root sample 6; outgrowth in LB
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt PS417_24415 and PS417_24420 are separated by 63 nucleotides PS417_24420 and PS417_24430 are separated by 206 nucleotides PS417_24430 and PS417_24435 overlap by 4 nucleotides
PS417_24415: PS417_24415 - siderophore-interacting protein, at 5,302,120 to 5,303,118
_24415
PS417_24420: PS417_24420 - RNA polymerase sigma70, at 5,303,182 to 5,303,703
_24420
PS417_24430: PS417_24430 - 3-dehydroquinate dehydratase, at 5,303,910 to 5,304,359
_24430
PS417_24435: PS417_24435 - shikimate dehydrogenase, at 5,304,356 to 5,305,204
_24435
Position (kb) 5303
5304 Strain fitness (log2 ratio) -1
0
1
2
3 at 5302.361 kb on - strand, within PS417_24415 at 5302.403 kb on + strand, within PS417_24415 at 5302.403 kb on + strand, within PS417_24415 at 5302.403 kb on + strand, within PS417_24415 at 5302.670 kb on + strand, within PS417_24415 at 5302.671 kb on - strand, within PS417_24415 at 5302.671 kb on - strand, within PS417_24415 at 5302.760 kb on + strand, within PS417_24415 at 5302.761 kb on - strand, within PS417_24415 at 5302.761 kb on - strand, within PS417_24415 at 5302.774 kb on - strand at 5302.932 kb on - strand, within PS417_24415 at 5303.086 kb on - strand at 5303.141 kb on + strand at 5303.142 kb on - strand at 5303.145 kb on + strand at 5303.145 kb on + strand at 5303.145 kb on + strand at 5303.146 kb on - strand at 5303.231 kb on + strand at 5303.232 kb on - strand at 5303.529 kb on - strand, within PS417_24420 at 5303.743 kb on + strand at 5303.892 kb on - strand at 5303.892 kb on - strand at 5303.892 kb on - strand at 5303.892 kb on - strand at 5303.892 kb on - strand at 5303.980 kb on - strand, within PS417_24430 at 5304.340 kb on + strand at 5304.341 kb on - strand at 5304.558 kb on + strand, within PS417_24435 at 5304.559 kb on + strand, within PS417_24435 at 5304.563 kb on + strand, within PS417_24435
Per-strain Table
Position Strand Gene LocusTag Fraction root sample 6; outgrowth in LB remove 5,302,361 - PS417_24415 0.24 +2.6 5,302,403 + PS417_24415 0.28 +1.0 5,302,403 + PS417_24415 0.28 +0.1 5,302,403 + PS417_24415 0.28 -0.4 5,302,670 + PS417_24415 0.55 -1.1 5,302,671 - PS417_24415 0.55 -0.8 5,302,671 - PS417_24415 0.55 -0.6 5,302,760 + PS417_24415 0.64 -0.0 5,302,761 - PS417_24415 0.64 -0.5 5,302,761 - PS417_24415 0.64 -0.4 5,302,774 - +1.1 5,302,932 - PS417_24415 0.81 +1.1 5,303,086 - +0.9 5,303,141 + +0.1 5,303,142 - +2.3 5,303,145 + +0.6 5,303,145 + +0.7 5,303,145 + +0.2 5,303,146 - +3.7 5,303,231 + -0.6 5,303,232 - +2.7 5,303,529 - PS417_24420 0.66 +0.4 5,303,743 + -0.4 5,303,892 - -0.8 5,303,892 - +0.2 5,303,892 - +2.0 5,303,892 - +1.1 5,303,892 - +2.8 5,303,980 - PS417_24430 0.16 +1.6 5,304,340 + +1.0 5,304,341 - +2.1 5,304,558 + PS417_24435 0.24 -1.1 5,304,559 + PS417_24435 0.24 -0.4 5,304,563 + PS417_24435 0.24 +0.1
Or see this region's nucleotide sequence