Experiment: root sample 6; outgrowth in LB
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt PS417_02415 and PS417_02420 are separated by 123 nucleotides PS417_02420 and PS417_02425 are separated by 15 nucleotides PS417_02425 and PS417_02430 are separated by 57 nucleotides
PS417_02415: PS417_02415 - phosphoserine phosphatase, at 553,413 to 554,627
_02415
PS417_02420: PS417_02420 - phosphatidylserine decarboxylase, at 554,751 to 555,611
_02420
PS417_02425: PS417_02425 - thiosulfate sulfurtransferase, at 555,627 to 556,442
_02425
PS417_02430: PS417_02430 - histidine kinase, at 556,500 to 558,035
_02430
Position (kb) 554
555
556 Strain fitness (log2 ratio) -2
-1
0
1 at 553.766 kb on + strand, within PS417_02415 at 554.316 kb on + strand, within PS417_02415 at 554.317 kb on - strand, within PS417_02415 at 554.707 kb on - strand at 554.759 kb on + strand at 554.760 kb on - strand at 554.760 kb on - strand at 555.622 kb on - strand at 555.683 kb on - strand at 555.683 kb on - strand at 555.724 kb on + strand, within PS417_02425 at 555.725 kb on - strand, within PS417_02425 at 555.986 kb on - strand, within PS417_02425 at 556.115 kb on - strand, within PS417_02425 at 556.193 kb on - strand, within PS417_02425 at 556.193 kb on - strand, within PS417_02425 at 556.193 kb on - strand, within PS417_02425 at 556.557 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction root sample 6; outgrowth in LB remove 553,766 + PS417_02415 0.29 -0.6 554,316 + PS417_02415 0.74 +0.3 554,317 - PS417_02415 0.74 -2.6 554,707 - +0.9 554,759 + -0.0 554,760 - -1.9 554,760 - -0.4 555,622 - -0.6 555,683 - +1.4 555,683 - -0.6 555,724 + PS417_02425 0.12 +0.1 555,725 - PS417_02425 0.12 -0.5 555,986 - PS417_02425 0.44 -0.7 556,115 - PS417_02425 0.60 -1.5 556,193 - PS417_02425 0.69 -0.3 556,193 - PS417_02425 0.69 +0.8 556,193 - PS417_02425 0.69 -1.0 556,557 - -1.9
Or see this region's nucleotide sequence