Experiment: root sample 6; outgrowth in LB
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt PS417_24145 and PS417_24150 are separated by 711 nucleotides PS417_24150 and PS417_24155 overlap by 8 nucleotides
PS417_24145: PS417_24145 - hypothetical protein, at 5,229,214 to 5,229,750
_24145
PS417_24150: PS417_24150 - hypothetical protein, at 5,230,462 to 5,231,307
_24150
PS417_24155: PS417_24155 - ATP-binding protein, at 5,231,300 to 5,234,629
_24155
Position (kb) 5230
5231
5232 Strain fitness (log2 ratio) -2
-1
0
1
2
3
4
5
6
7
8 at 5229.488 kb on + strand, within PS417_24145 at 5229.488 kb on + strand, within PS417_24145 at 5229.488 kb on + strand, within PS417_24145 at 5229.489 kb on - strand, within PS417_24145 at 5229.489 kb on - strand, within PS417_24145 at 5229.574 kb on + strand, within PS417_24145 at 5229.574 kb on + strand, within PS417_24145 at 5229.574 kb on + strand at 5229.574 kb on + strand, within PS417_24145 at 5229.574 kb on + strand, within PS417_24145 at 5229.575 kb on - strand, within PS417_24145 at 5229.575 kb on - strand, within PS417_24145 at 5229.575 kb on - strand, within PS417_24145 at 5229.575 kb on - strand, within PS417_24145 at 5229.577 kb on + strand, within PS417_24145 at 5229.577 kb on + strand, within PS417_24145 at 5229.577 kb on + strand, within PS417_24145 at 5229.578 kb on - strand, within PS417_24145 at 5229.578 kb on - strand, within PS417_24145 at 5229.622 kb on - strand, within PS417_24145 at 5229.622 kb on - strand, within PS417_24145 at 5229.667 kb on - strand, within PS417_24145 at 5229.700 kb on - strand at 5229.700 kb on - strand at 5229.700 kb on - strand at 5229.700 kb on - strand at 5229.811 kb on + strand at 5229.812 kb on - strand at 5229.812 kb on - strand at 5229.812 kb on - strand at 5229.836 kb on + strand at 5229.850 kb on - strand at 5229.853 kb on + strand at 5229.854 kb on - strand at 5229.968 kb on + strand at 5230.004 kb on + strand at 5230.004 kb on + strand at 5230.004 kb on + strand at 5230.004 kb on + strand at 5230.005 kb on - strand at 5230.045 kb on + strand at 5230.046 kb on - strand at 5230.049 kb on + strand at 5230.050 kb on - strand at 5230.050 kb on - strand at 5230.147 kb on + strand at 5230.147 kb on + strand at 5230.148 kb on - strand at 5230.178 kb on + strand at 5230.178 kb on + strand at 5230.186 kb on - strand at 5230.235 kb on + strand at 5230.235 kb on + strand at 5230.235 kb on + strand at 5230.256 kb on + strand at 5230.256 kb on + strand at 5230.281 kb on + strand at 5230.492 kb on - strand at 5230.906 kb on + strand, within PS417_24150 at 5230.907 kb on - strand, within PS417_24150 at 5231.821 kb on + strand, within PS417_24155 at 5231.967 kb on - strand, within PS417_24155 at 5232.166 kb on - strand, within PS417_24155
Per-strain Table
Position Strand Gene LocusTag Fraction root sample 6; outgrowth in LB remove 5,229,488 + PS417_24145 0.51 -0.1 5,229,488 + PS417_24145 0.51 +0.0 5,229,488 + PS417_24145 0.51 -0.0 5,229,489 - PS417_24145 0.51 -1.1 5,229,489 - PS417_24145 0.51 +0.5 5,229,574 + PS417_24145 0.67 +0.1 5,229,574 + PS417_24145 0.67 +0.3 5,229,574 + +0.8 5,229,574 + PS417_24145 0.67 -0.5 5,229,574 + PS417_24145 0.67 +0.7 5,229,575 - PS417_24145 0.67 -0.6 5,229,575 - PS417_24145 0.67 -0.4 5,229,575 - PS417_24145 0.67 -0.1 5,229,575 - PS417_24145 0.67 +0.2 5,229,577 + PS417_24145 0.68 +0.2 5,229,577 + PS417_24145 0.68 -0.5 5,229,577 + PS417_24145 0.68 -1.3 5,229,578 - PS417_24145 0.68 -1.5 5,229,578 - PS417_24145 0.68 -1.3 5,229,622 - PS417_24145 0.76 -0.9 5,229,622 - PS417_24145 0.76 -0.6 5,229,667 - PS417_24145 0.84 -0.4 5,229,700 - -0.5 5,229,700 - +0.1 5,229,700 - +0.7 5,229,700 - +0.4 5,229,811 + -1.0 5,229,812 - -0.6 5,229,812 - -1.0 5,229,812 - +1.5 5,229,836 + -0.8 5,229,850 - +1.9 5,229,853 + +0.4 5,229,854 - +4.8 5,229,968 + -0.6 5,230,004 + -0.5 5,230,004 + -1.1 5,230,004 + +0.1 5,230,004 + +0.1 5,230,005 - +1.3 5,230,045 + +1.7 5,230,046 - +0.7 5,230,049 + -1.1 5,230,050 - +1.4 5,230,050 - +0.1 5,230,147 + +8.2 5,230,147 + +6.9 5,230,148 - +0.1 5,230,178 + +7.9 5,230,178 + +7.4 5,230,186 - -1.8 5,230,235 + +0.5 5,230,235 + +2.1 5,230,235 + -0.9 5,230,256 + +0.9 5,230,256 + +0.8 5,230,281 + +1.3 5,230,492 - -1.0 5,230,906 + PS417_24150 0.52 +1.0 5,230,907 - PS417_24150 0.53 +1.3 5,231,821 + PS417_24155 0.16 -0.0 5,231,967 - PS417_24155 0.20 +0.7 5,232,166 - PS417_24155 0.26 +0.1
Or see this region's nucleotide sequence