Experiment: root sample 6; outgrowth in LB
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt PS417_02405 and PS417_02410 are separated by 175 nucleotides PS417_02410 and PS417_02415 are separated by 133 nucleotides
PS417_02405: PS417_02405 - hypothetical protein, at 550,888 to 551,601
_02405
PS417_02410: PS417_02410 - histidine kinase, at 551,777 to 553,279
_02410
PS417_02415: PS417_02415 - phosphoserine phosphatase, at 553,413 to 554,627
_02415
Position (kb) 551
552
553
554 Strain fitness (log2 ratio) -2
-1
0
1 at 550.797 kb on + strand at 550.833 kb on + strand at 550.844 kb on + strand at 550.850 kb on + strand at 550.850 kb on + strand at 550.850 kb on + strand at 550.850 kb on + strand at 550.851 kb on - strand at 550.978 kb on + strand, within PS417_02405 at 550.979 kb on - strand, within PS417_02405 at 551.236 kb on - strand, within PS417_02405 at 551.266 kb on - strand, within PS417_02405 at 551.343 kb on - strand, within PS417_02405 at 551.712 kb on + strand at 551.712 kb on + strand at 551.713 kb on - strand at 551.730 kb on + strand at 551.763 kb on + strand at 551.763 kb on + strand at 551.764 kb on - strand at 551.764 kb on - strand at 551.770 kb on + strand at 551.770 kb on + strand at 551.771 kb on - strand at 553.320 kb on - strand at 553.595 kb on - strand, within PS417_02415 at 553.622 kb on + strand, within PS417_02415 at 553.622 kb on + strand, within PS417_02415 at 553.623 kb on - strand, within PS417_02415 at 553.766 kb on + strand, within PS417_02415
Per-strain Table
Position Strand Gene LocusTag Fraction root sample 6; outgrowth in LB remove 550,797 + -0.6 550,833 + -1.4 550,844 + -1.5 550,850 + -1.7 550,850 + -1.1 550,850 + -0.0 550,850 + -0.7 550,851 - -0.2 550,978 + PS417_02405 0.13 -0.8 550,979 - PS417_02405 0.13 +0.5 551,236 - PS417_02405 0.49 -0.3 551,266 - PS417_02405 0.53 +1.0 551,343 - PS417_02405 0.64 +0.4 551,712 + -0.9 551,712 + +0.3 551,713 - -1.2 551,730 + +1.6 551,763 + -0.1 551,763 + +0.6 551,764 - -0.4 551,764 - +1.0 551,770 + -2.0 551,770 + +0.2 551,771 - -0.2 553,320 - +0.7 553,595 - PS417_02415 0.15 -0.6 553,622 + PS417_02415 0.17 -1.9 553,622 + PS417_02415 0.17 -2.2 553,623 - PS417_02415 0.17 +0.6 553,766 + PS417_02415 0.29 -0.6
Or see this region's nucleotide sequence