Strain Fitness in Pseudomonas simiae WCS417 around PS417_02400

Experiment: root sample 6; outgrowth in LB

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPS417_02395 and PS417_02400 are separated by 73 nucleotidesPS417_02400 and PS417_02405 are separated by 173 nucleotides PS417_02395: PS417_02395 - DNA topoisomerase IV subunit B, at 547,372 to 548,376 _02395 PS417_02400: PS417_02400 - DNA topoisomerase IV subunit A, at 548,450 to 550,714 _02400 PS417_02405: PS417_02405 - hypothetical protein, at 550,888 to 551,601 _02405 Position (kb) 548 549 550 551Strain fitness (log2 ratio) -1 0 1 2at 547.533 kb on - strand, within PS417_02395at 547.533 kb on - strand, within PS417_02395at 547.568 kb on - strand, within PS417_02395at 547.609 kb on + strand, within PS417_02395at 547.744 kb on + strand, within PS417_02395at 547.745 kb on - strandat 548.218 kb on + strand, within PS417_02395at 550.797 kb on + strandat 550.833 kb on + strandat 550.844 kb on + strandat 550.850 kb on + strandat 550.850 kb on + strandat 550.850 kb on + strandat 550.850 kb on + strandat 550.851 kb on - strandat 550.978 kb on + strand, within PS417_02405at 550.979 kb on - strand, within PS417_02405at 551.236 kb on - strand, within PS417_02405at 551.266 kb on - strand, within PS417_02405at 551.343 kb on - strand, within PS417_02405at 551.712 kb on + strandat 551.712 kb on + strandat 551.713 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction root sample 6; outgrowth in LB
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547,533 - PS417_02395 0.16 +0.5
547,533 - PS417_02395 0.16 +1.0
547,568 - PS417_02395 0.20 -1.2
547,609 + PS417_02395 0.24 -0.3
547,744 + PS417_02395 0.37 -0.4
547,745 - +2.2
548,218 + PS417_02395 0.84 +1.8
550,797 + -0.6
550,833 + -1.4
550,844 + -1.5
550,850 + -1.7
550,850 + -1.1
550,850 + -0.0
550,850 + -0.7
550,851 - -0.2
550,978 + PS417_02405 0.13 -0.8
550,979 - PS417_02405 0.13 +0.5
551,236 - PS417_02405 0.49 -0.3
551,266 - PS417_02405 0.53 +1.0
551,343 - PS417_02405 0.64 +0.4
551,712 + -0.9
551,712 + +0.3
551,713 - -1.2

Or see this region's nucleotide sequence