Strain Fitness in Pseudomonas simiae WCS417 around PS417_24010

Experiment: root sample 6; outgrowth in LB

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntPS417_24005 and PS417_24010 are separated by 16 nucleotidesPS417_24010 and PS417_24015 are separated by 8 nucleotides PS417_24005: PS417_24005 - phosphoglucosamine mutase, at 5,196,631 to 5,197,968 _24005 PS417_24010: PS417_24010 - dihydropteroate synthase, at 5,197,985 to 5,198,836 _24010 PS417_24015: PS417_24015 - ATP-dependent metalloprotease, at 5,198,845 to 5,200,755 _24015 Position (kb) 5197 5198 5199Strain fitness (log2 ratio) -2 -1 0 1 2at 5197.969 kb on - strandat 5197.969 kb on - strandat 5197.969 kb on - strandat 5197.969 kb on - strandat 5198.847 kb on - strandat 5198.847 kb on - strand

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction root sample 6; outgrowth in LB
remove
5,197,969 - +0.3
5,197,969 - -0.2
5,197,969 - +2.0
5,197,969 - -2.6
5,198,847 - +0.7
5,198,847 - -0.5

Or see this region's nucleotide sequence