Strain Fitness in Pseudomonas simiae WCS417 around PS417_23970

Experiment: root sample 6; outgrowth in LB

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPS417_23960 and PS417_23965 are separated by 3 nucleotidesPS417_23965 and PS417_23970 are separated by 159 nucleotidesPS417_23970 and PS417_23975 are separated by 27 nucleotides PS417_23960: PS417_23960 - pseudouridine synthase, at 5,188,983 to 5,189,900 _23960 PS417_23965: PS417_23965 - ribosome-binding factor A, at 5,189,904 to 5,190,299 _23965 PS417_23970: PS417_23970 - translation initiation factor IF-2, at 5,190,459 to 5,192,984 _23970 PS417_23975: PS417_23975 - transcription elongation factor NusA, at 5,193,012 to 5,194,493 _23975 Position (kb) 5190 5191 5192 5193Strain fitness (log2 ratio) -1 0 1at 5189.840 kb on + strandat 5193.010 kb on - strandat 5193.014 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction root sample 6; outgrowth in LB
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5,189,840 + -0.5
5,193,010 - +0.2
5,193,014 - -0.6

Or see this region's nucleotide sequence