Experiment: root sample 6; outgrowth in LB
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt PS417_02380 and PS417_02385 are separated by 205 nucleotides PS417_02385 and PS417_02390 are separated by 45 nucleotides PS417_02390 and PS417_02395 overlap by 1 nucleotides
PS417_02380: PS417_02380 - serine/threonine protein phosphatase, at 543,790 to 544,605
_02380
PS417_02385: PS417_02385 - esterase, at 544,811 to 545,419
_02385
PS417_02390: PS417_02390 - DNA topoisomerase IV subunit B, at 545,465 to 547,372
_02390
PS417_02395: PS417_02395 - DNA topoisomerase IV subunit B, at 547,372 to 548,376
_02395
Position (kb) 545
546
547
548 Strain fitness (log2 ratio) -2
-1
0
1
2
3 at 544.575 kb on + strand at 544.603 kb on + strand at 544.606 kb on + strand at 544.606 kb on + strand at 544.606 kb on + strand at 544.607 kb on - strand at 544.607 kb on - strand at 544.607 kb on - strand at 544.613 kb on - strand at 544.732 kb on + strand at 544.732 kb on + strand at 544.733 kb on - strand at 544.829 kb on + strand at 544.829 kb on + strand at 544.829 kb on + strand at 544.830 kb on - strand at 544.830 kb on - strand at 544.831 kb on + strand at 544.832 kb on - strand at 545.024 kb on + strand, within PS417_02385 at 545.027 kb on + strand, within PS417_02385 at 547.533 kb on - strand, within PS417_02395 at 547.533 kb on - strand, within PS417_02395 at 547.568 kb on - strand, within PS417_02395 at 547.609 kb on + strand, within PS417_02395 at 547.744 kb on + strand, within PS417_02395 at 547.745 kb on - strand at 548.218 kb on + strand, within PS417_02395
Per-strain Table
Position Strand Gene LocusTag Fraction root sample 6; outgrowth in LB remove 544,575 + +0.8 544,603 + -0.0 544,606 + +0.4 544,606 + +0.6 544,606 + +0.8 544,607 - -1.9 544,607 - -0.0 544,607 - +0.8 544,613 - -0.9 544,732 + +0.1 544,732 + -1.2 544,733 - +2.9 544,829 + -0.2 544,829 + -2.6 544,829 + +0.8 544,830 - +3.6 544,830 - -0.3 544,831 + -0.1 544,832 - -0.6 545,024 + PS417_02385 0.35 +0.7 545,027 + PS417_02385 0.35 -0.0 547,533 - PS417_02395 0.16 +0.5 547,533 - PS417_02395 0.16 +1.0 547,568 - PS417_02395 0.20 -1.2 547,609 + PS417_02395 0.24 -0.3 547,744 + PS417_02395 0.37 -0.4 547,745 - +2.2 548,218 + PS417_02395 0.84 +1.8
Or see this region's nucleotide sequence