Experiment: root sample 6; outgrowth in LB
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt PS417_23870 and PS417_23875 are separated by 319 nucleotides PS417_23875 and PS417_23880 are separated by 83 nucleotides
PS417_23870: PS417_23870 - aminotransferase, at 5,164,113 to 5,165,285
_23870
PS417_23875: PS417_23875 - molecular chaperone DnaK, at 5,165,605 to 5,166,048
_23875
PS417_23880: PS417_23880 - glutamyl-Q tRNA(Asp) ligase, at 5,166,132 to 5,167,019
_23880
Position (kb) 5165
5166
5167 Strain fitness (log2 ratio) -1
0
1
2 at 5164.651 kb on + strand, within PS417_23870 at 5164.652 kb on - strand, within PS417_23870 at 5164.652 kb on - strand, within PS417_23870 at 5164.666 kb on + strand, within PS417_23870 at 5164.666 kb on + strand, within PS417_23870 at 5164.666 kb on + strand, within PS417_23870 at 5164.667 kb on - strand, within PS417_23870 at 5164.667 kb on - strand, within PS417_23870 at 5164.835 kb on - strand, within PS417_23870 at 5165.041 kb on + strand, within PS417_23870 at 5165.090 kb on + strand, within PS417_23870 at 5165.090 kb on + strand, within PS417_23870 at 5165.091 kb on - strand, within PS417_23870 at 5165.092 kb on + strand, within PS417_23870 at 5165.093 kb on - strand, within PS417_23870 at 5165.093 kb on - strand, within PS417_23870 at 5165.272 kb on + strand at 5165.273 kb on - strand at 5165.339 kb on - strand at 5165.350 kb on + strand at 5165.350 kb on + strand at 5165.350 kb on + strand at 5165.351 kb on - strand at 5165.351 kb on - strand at 5165.409 kb on - strand at 5165.409 kb on - strand at 5165.422 kb on + strand at 5165.422 kb on + strand at 5165.423 kb on - strand at 5165.423 kb on - strand at 5165.427 kb on - strand at 5165.427 kb on - strand at 5165.449 kb on + strand at 5165.449 kb on + strand at 5165.506 kb on + strand at 5165.580 kb on + strand at 5166.143 kb on + strand at 5166.147 kb on + strand at 5166.147 kb on + strand at 5166.147 kb on + strand at 5166.147 kb on + strand at 5166.148 kb on - strand at 5166.148 kb on - strand at 5166.330 kb on + strand, within PS417_23880 at 5166.331 kb on - strand, within PS417_23880 at 5166.384 kb on + strand, within PS417_23880 at 5166.385 kb on - strand, within PS417_23880 at 5166.462 kb on + strand, within PS417_23880 at 5166.462 kb on + strand, within PS417_23880 at 5166.462 kb on + strand, within PS417_23880 at 5166.462 kb on + strand, within PS417_23880 at 5166.474 kb on + strand, within PS417_23880 at 5166.604 kb on + strand, within PS417_23880 at 5166.605 kb on - strand, within PS417_23880 at 5166.639 kb on + strand, within PS417_23880 at 5166.739 kb on - strand, within PS417_23880 at 5166.871 kb on + strand, within PS417_23880
Per-strain Table
Position Strand Gene LocusTag Fraction root sample 6; outgrowth in LB remove 5,164,651 + PS417_23870 0.46 -0.4 5,164,652 - PS417_23870 0.46 -0.6 5,164,652 - PS417_23870 0.46 -1.0 5,164,666 + PS417_23870 0.47 -0.3 5,164,666 + PS417_23870 0.47 -0.6 5,164,666 + PS417_23870 0.47 -1.2 5,164,667 - PS417_23870 0.47 -0.6 5,164,667 - PS417_23870 0.47 -0.5 5,164,835 - PS417_23870 0.62 +0.6 5,165,041 + PS417_23870 0.79 +0.1 5,165,090 + PS417_23870 0.83 -1.7 5,165,090 + PS417_23870 0.83 -0.1 5,165,091 - PS417_23870 0.83 -0.1 5,165,092 + PS417_23870 0.83 -0.4 5,165,093 - PS417_23870 0.84 +0.3 5,165,093 - PS417_23870 0.84 +1.6 5,165,272 + +0.2 5,165,273 - +0.6 5,165,339 - +0.8 5,165,350 + +1.4 5,165,350 + +0.6 5,165,350 + -1.3 5,165,351 - +0.7 5,165,351 - -0.2 5,165,409 - +1.8 5,165,409 - -0.4 5,165,422 + +0.8 5,165,422 + +0.1 5,165,423 - +0.5 5,165,423 - +0.4 5,165,427 - +0.9 5,165,427 - -0.6 5,165,449 + +0.1 5,165,449 + +1.8 5,165,506 + -0.8 5,165,580 + +1.1 5,166,143 + +1.6 5,166,147 + -0.5 5,166,147 + -0.6 5,166,147 + +0.2 5,166,147 + -0.4 5,166,148 - +1.0 5,166,148 - +0.4 5,166,330 + PS417_23880 0.22 -0.3 5,166,331 - PS417_23880 0.22 -0.8 5,166,384 + PS417_23880 0.28 +0.6 5,166,385 - PS417_23880 0.28 +1.7 5,166,462 + PS417_23880 0.37 +2.0 5,166,462 + PS417_23880 0.37 -0.3 5,166,462 + PS417_23880 0.37 -0.2 5,166,462 + PS417_23880 0.37 -0.9 5,166,474 + PS417_23880 0.39 +0.2 5,166,604 + PS417_23880 0.53 -0.0 5,166,605 - PS417_23880 0.53 -1.6 5,166,639 + PS417_23880 0.57 +0.4 5,166,739 - PS417_23880 0.68 -0.8 5,166,871 + PS417_23880 0.83 -0.8
Or see this region's nucleotide sequence