Experiment: root sample 6; outgrowth in LB
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt PS417_23855 and PS417_23860 are separated by 156 nucleotides PS417_23860 and PS417_23865 overlap by 4 nucleotides PS417_23865 and PS417_23870 overlap by 1 nucleotides
PS417_23855: PS417_23855 - ABC transporter substrate-binding protein, at 5,162,054 to 5,162,932
_23855
PS417_23860: PS417_23860 - Rieske (2Fe-2S) protein, at 5,163,089 to 5,163,406
_23860
PS417_23865: PS417_23865 - XRE family transcriptional regulator, at 5,163,403 to 5,164,113
_23865
PS417_23870: PS417_23870 - aminotransferase, at 5,164,113 to 5,165,285
_23870
Position (kb) 5163
5164 Strain fitness (log2 ratio) -1
0
1
2
3 at 5162.732 kb on - strand, within PS417_23855 at 5162.843 kb on + strand, within PS417_23855 at 5162.932 kb on + strand at 5162.933 kb on - strand at 5162.933 kb on - strand at 5162.987 kb on + strand at 5162.987 kb on + strand at 5162.987 kb on + strand at 5162.987 kb on + strand at 5162.987 kb on + strand at 5162.987 kb on + strand at 5162.987 kb on + strand at 5162.987 kb on + strand at 5162.988 kb on - strand at 5162.988 kb on - strand at 5163.006 kb on + strand at 5163.078 kb on + strand at 5163.079 kb on - strand at 5163.191 kb on + strand, within PS417_23860 at 5163.191 kb on + strand, within PS417_23860 at 5163.192 kb on - strand, within PS417_23860 at 5163.197 kb on + strand, within PS417_23860 at 5163.197 kb on + strand, within PS417_23860 at 5163.197 kb on + strand, within PS417_23860 at 5163.197 kb on + strand, within PS417_23860 at 5163.197 kb on + strand, within PS417_23860 at 5163.197 kb on + strand at 5163.198 kb on - strand, within PS417_23860 at 5163.198 kb on - strand, within PS417_23860 at 5163.198 kb on - strand, within PS417_23860 at 5163.355 kb on + strand, within PS417_23860 at 5163.415 kb on + strand at 5163.415 kb on + strand at 5163.415 kb on + strand at 5163.416 kb on - strand at 5163.416 kb on - strand at 5163.416 kb on - strand at 5163.416 kb on - strand at 5163.438 kb on - strand at 5163.438 kb on - strand at 5163.468 kb on - strand at 5163.519 kb on - strand, within PS417_23865 at 5163.519 kb on - strand, within PS417_23865 at 5163.578 kb on + strand, within PS417_23865 at 5163.578 kb on + strand, within PS417_23865 at 5163.578 kb on + strand, within PS417_23865 at 5163.578 kb on + strand, within PS417_23865 at 5163.579 kb on - strand, within PS417_23865 at 5163.579 kb on - strand, within PS417_23865 at 5163.701 kb on - strand, within PS417_23865 at 5163.824 kb on - strand, within PS417_23865 at 5163.987 kb on + strand, within PS417_23865 at 5163.987 kb on + strand, within PS417_23865 at 5163.987 kb on + strand, within PS417_23865 at 5163.987 kb on + strand, within PS417_23865 at 5163.988 kb on - strand, within PS417_23865 at 5163.988 kb on - strand, within PS417_23865 at 5163.988 kb on - strand, within PS417_23865 at 5164.067 kb on + strand at 5164.068 kb on - strand at 5164.319 kb on - strand, within PS417_23870 at 5164.324 kb on + strand, within PS417_23870 at 5164.325 kb on - strand, within PS417_23870
Per-strain Table
Position Strand Gene LocusTag Fraction root sample 6; outgrowth in LB remove 5,162,732 - PS417_23855 0.77 -1.5 5,162,843 + PS417_23855 0.90 -0.7 5,162,932 + -1.6 5,162,933 - -1.4 5,162,933 - -0.9 5,162,987 + +0.4 5,162,987 + -1.0 5,162,987 + +0.4 5,162,987 + -0.8 5,162,987 + +0.5 5,162,987 + +2.6 5,162,987 + +0.1 5,162,987 + -0.2 5,162,988 - +0.1 5,162,988 - -1.3 5,163,006 + -0.5 5,163,078 + -0.7 5,163,079 - -0.4 5,163,191 + PS417_23860 0.32 -0.6 5,163,191 + PS417_23860 0.32 +1.4 5,163,192 - PS417_23860 0.32 +0.1 5,163,197 + PS417_23860 0.34 -1.0 5,163,197 + PS417_23860 0.34 -0.8 5,163,197 + PS417_23860 0.34 -0.5 5,163,197 + PS417_23860 0.34 -0.7 5,163,197 + PS417_23860 0.34 -0.6 5,163,197 + +0.4 5,163,198 - PS417_23860 0.34 -0.2 5,163,198 - PS417_23860 0.34 +0.1 5,163,198 - PS417_23860 0.34 -0.6 5,163,355 + PS417_23860 0.84 -0.5 5,163,415 + -0.7 5,163,415 + -0.7 5,163,415 + +0.2 5,163,416 - -1.0 5,163,416 - +0.0 5,163,416 - -0.7 5,163,416 - +0.1 5,163,438 - +0.2 5,163,438 - -0.6 5,163,468 - +0.6 5,163,519 - PS417_23865 0.16 +0.5 5,163,519 - PS417_23865 0.16 -0.7 5,163,578 + PS417_23865 0.25 -0.4 5,163,578 + PS417_23865 0.25 -1.5 5,163,578 + PS417_23865 0.25 -0.9 5,163,578 + PS417_23865 0.25 +0.6 5,163,579 - PS417_23865 0.25 -0.2 5,163,579 - PS417_23865 0.25 -0.3 5,163,701 - PS417_23865 0.42 +2.0 5,163,824 - PS417_23865 0.59 -0.3 5,163,987 + PS417_23865 0.82 +1.4 5,163,987 + PS417_23865 0.82 -0.2 5,163,987 + PS417_23865 0.82 +0.5 5,163,987 + PS417_23865 0.82 -0.4 5,163,988 - PS417_23865 0.82 +0.3 5,163,988 - PS417_23865 0.82 -0.4 5,163,988 - PS417_23865 0.82 -0.7 5,164,067 + -0.5 5,164,068 - +0.5 5,164,319 - PS417_23870 0.18 -0.7 5,164,324 + PS417_23870 0.18 +3.4 5,164,325 - PS417_23870 0.18 -1.3
Or see this region's nucleotide sequence