Experiment: root sample 6; outgrowth in LB
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt PS417_02370 and PS417_02375 overlap by 10 nucleotides PS417_02375 and PS417_02380 are separated by 97 nucleotides PS417_02380 and PS417_02385 are separated by 205 nucleotides PS417_02385 and PS417_02390 are separated by 45 nucleotides
PS417_02370: PS417_02370 - ADP-ribose pyrophosphatase, at 542,635 to 543,252
_02370
PS417_02375: PS417_02375 - hypothetical protein, at 543,243 to 543,692
_02375
PS417_02380: PS417_02380 - serine/threonine protein phosphatase, at 543,790 to 544,605
_02380
PS417_02385: PS417_02385 - esterase, at 544,811 to 545,419
_02385
PS417_02390: PS417_02390 - DNA topoisomerase IV subunit B, at 545,465 to 547,372
_02390
Position (kb) 543
544
545 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3 at 543.220 kb on - strand at 543.251 kb on - strand at 543.312 kb on + strand, within PS417_02375 at 543.312 kb on + strand, within PS417_02375 at 543.313 kb on - strand, within PS417_02375 at 543.435 kb on + strand, within PS417_02375 at 543.511 kb on - strand, within PS417_02375 at 543.511 kb on - strand, within PS417_02375 at 543.573 kb on + strand, within PS417_02375 at 543.573 kb on + strand, within PS417_02375 at 543.574 kb on - strand, within PS417_02375 at 543.690 kb on + strand at 543.715 kb on - strand at 544.575 kb on + strand at 544.603 kb on + strand at 544.606 kb on + strand at 544.606 kb on + strand at 544.606 kb on + strand at 544.607 kb on - strand at 544.607 kb on - strand at 544.607 kb on - strand at 544.613 kb on - strand at 544.732 kb on + strand at 544.732 kb on + strand at 544.733 kb on - strand at 544.829 kb on + strand at 544.829 kb on + strand at 544.829 kb on + strand at 544.830 kb on - strand at 544.830 kb on - strand at 544.831 kb on + strand at 544.832 kb on - strand at 545.024 kb on + strand, within PS417_02385 at 545.027 kb on + strand, within PS417_02385
Per-strain Table
Position Strand Gene LocusTag Fraction root sample 6; outgrowth in LB remove 543,220 - -0.6 543,251 - +2.2 543,312 + PS417_02375 0.15 +0.0 543,312 + PS417_02375 0.15 -0.8 543,313 - PS417_02375 0.16 -1.4 543,435 + PS417_02375 0.43 +0.7 543,511 - PS417_02375 0.60 -1.6 543,511 - PS417_02375 0.60 -2.0 543,573 + PS417_02375 0.73 -1.6 543,573 + PS417_02375 0.73 -2.8 543,574 - PS417_02375 0.74 -1.0 543,690 + +0.8 543,715 - +1.6 544,575 + +0.8 544,603 + -0.0 544,606 + +0.4 544,606 + +0.6 544,606 + +0.8 544,607 - -1.9 544,607 - -0.0 544,607 - +0.8 544,613 - -0.9 544,732 + +0.1 544,732 + -1.2 544,733 - +2.9 544,829 + -0.2 544,829 + -2.6 544,829 + +0.8 544,830 - +3.6 544,830 - -0.3 544,831 + -0.1 544,832 - -0.6 545,024 + PS417_02385 0.35 +0.7 545,027 + PS417_02385 0.35 -0.0
Or see this region's nucleotide sequence