Experiment: root sample 6; outgrowth in LB
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt PS417_23500 and PS417_23505 are separated by 23 nucleotides PS417_23505 and PS417_23510 overlap by 8 nucleotides PS417_23510 and PS417_23515 are separated by 186 nucleotides PS417_23515 and PS417_23520 are separated by 283 nucleotides
PS417_23500: PS417_23500 - D-erythro-7,8-dihydroneopterin triphosphate epimerase, at 5,086,418 to 5,086,789
_23500
PS417_23505: PS417_23505 - cell division protein DedD, at 5,086,813 to 5,087,109
_23505
PS417_23510: PS417_23510 - HopJ type III effector protein, at 5,087,102 to 5,087,440
_23510
PS417_23515: PS417_23515 - thioredoxin reductase, at 5,087,627 to 5,088,589
_23515
PS417_23520: PS417_23520 - cysteine biosynthesis protein CysZ, at 5,088,873 to 5,089,640
_23520
Position (kb) 5087
5088
5089 Strain fitness (log2 ratio) -1
0
1
2 at 5086.952 kb on - strand, within PS417_23505 at 5086.952 kb on - strand, within PS417_23505 at 5087.186 kb on + strand, within PS417_23510 at 5087.187 kb on - strand, within PS417_23510 at 5087.192 kb on + strand, within PS417_23510 at 5087.192 kb on + strand, within PS417_23510 at 5088.617 kb on - strand at 5088.689 kb on - strand at 5088.736 kb on - strand at 5088.736 kb on - strand at 5088.751 kb on - strand at 5089.003 kb on - strand, within PS417_23520 at 5089.081 kb on - strand, within PS417_23520 at 5089.192 kb on + strand, within PS417_23520 at 5089.192 kb on + strand, within PS417_23520 at 5089.192 kb on + strand, within PS417_23520 at 5089.192 kb on + strand, within PS417_23520 at 5089.193 kb on - strand, within PS417_23520 at 5089.193 kb on - strand, within PS417_23520
Per-strain Table
Position Strand Gene LocusTag Fraction root sample 6; outgrowth in LB remove 5,086,952 - PS417_23505 0.47 -1.5 5,086,952 - PS417_23505 0.47 +1.0 5,087,186 + PS417_23510 0.25 -0.3 5,087,187 - PS417_23510 0.25 -0.4 5,087,192 + PS417_23510 0.27 -1.4 5,087,192 + PS417_23510 0.27 +0.1 5,088,617 - +1.8 5,088,689 - -0.5 5,088,736 - +0.5 5,088,736 - +2.1 5,088,751 - +0.9 5,089,003 - PS417_23520 0.17 -0.4 5,089,081 - PS417_23520 0.27 -1.3 5,089,192 + PS417_23520 0.42 +1.1 5,089,192 + PS417_23520 0.42 +2.7 5,089,192 + PS417_23520 0.42 +0.3 5,089,192 + PS417_23520 0.42 -0.6 5,089,193 - PS417_23520 0.42 +0.3 5,089,193 - PS417_23520 0.42 +0.1
Or see this region's nucleotide sequence