Experiment: root sample 6; outgrowth in LB
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt PS417_02340 and PS417_02345 are separated by 23 nucleotides PS417_02345 and PS417_02350 are separated by 120 nucleotides
PS417_02340: PS417_02340 - LysR family transcriptional regulator, at 534,164 to 535,054
_02340
PS417_02345: PS417_02345 - 3-deoxy-D-manno-octulosonic acid transferase, at 535,078 to 536,355
_02345
PS417_02350: PS417_02350 - channel protein TolC, at 536,476 to 537,915
_02350
Position (kb) 535
536
537 Strain fitness (log2 ratio) -2
-1
0
1
2 at 534.092 kb on - strand at 534.183 kb on + strand at 534.183 kb on + strand at 534.366 kb on + strand, within PS417_02340 at 534.527 kb on + strand, within PS417_02340 at 534.833 kb on + strand, within PS417_02340 at 534.834 kb on - strand, within PS417_02340 at 534.834 kb on - strand, within PS417_02340 at 534.889 kb on + strand, within PS417_02340 at 536.401 kb on + strand at 536.401 kb on + strand at 536.402 kb on - strand at 536.465 kb on - strand at 536.467 kb on - strand at 536.467 kb on - strand at 536.467 kb on - strand at 536.477 kb on + strand at 536.478 kb on - strand at 536.480 kb on + strand at 536.555 kb on + strand at 536.645 kb on + strand, within PS417_02350 at 536.667 kb on - strand, within PS417_02350 at 536.667 kb on - strand, within PS417_02350 at 536.758 kb on + strand, within PS417_02350 at 536.759 kb on - strand, within PS417_02350 at 536.907 kb on - strand, within PS417_02350 at 536.907 kb on - strand, within PS417_02350 at 537.059 kb on + strand, within PS417_02350 at 537.060 kb on - strand, within PS417_02350 at 537.137 kb on + strand, within PS417_02350 at 537.137 kb on + strand, within PS417_02350 at 537.137 kb on + strand, within PS417_02350 at 537.255 kb on - strand, within PS417_02350 at 537.342 kb on - strand, within PS417_02350
Per-strain Table
Position Strand Gene LocusTag Fraction root sample 6; outgrowth in LB remove 534,092 - -1.5 534,183 + +0.2 534,183 + -1.3 534,366 + PS417_02340 0.23 +0.2 534,527 + PS417_02340 0.41 +0.5 534,833 + PS417_02340 0.75 +1.3 534,834 - PS417_02340 0.75 +0.5 534,834 - PS417_02340 0.75 -1.0 534,889 + PS417_02340 0.81 -1.6 536,401 + +0.1 536,401 + -0.1 536,402 - +1.8 536,465 - -0.8 536,467 - +0.1 536,467 - +1.1 536,467 - +1.3 536,477 + +1.2 536,478 - +1.7 536,480 + +1.1 536,555 + -1.4 536,645 + PS417_02350 0.12 -2.4 536,667 - PS417_02350 0.13 -0.1 536,667 - PS417_02350 0.13 +0.2 536,758 + PS417_02350 0.20 -1.1 536,759 - PS417_02350 0.20 -0.4 536,907 - PS417_02350 0.30 +1.7 536,907 - PS417_02350 0.30 -0.6 537,059 + PS417_02350 0.40 -0.1 537,060 - PS417_02350 0.41 -0.3 537,137 + PS417_02350 0.46 +0.9 537,137 + PS417_02350 0.46 -0.0 537,137 + PS417_02350 0.46 +1.2 537,255 - PS417_02350 0.54 -0.8 537,342 - PS417_02350 0.60 +1.0
Or see this region's nucleotide sequence