Strain Fitness in Pseudomonas simiae WCS417 around PS417_23240

Experiment: root sample 6; outgrowth in LB

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPS417_23235 and PS417_23240 are separated by 62 nucleotidesPS417_23240 and PS417_23245 are separated by 43 nucleotides PS417_23235: PS417_23235 - preprotein translocase subunit SecD, at 5,032,024 to 5,033,892 _23235 PS417_23240: PS417_23240 - preprotein translocase subunit YajC, at 5,033,955 to 5,034,293 _23240 PS417_23245: PS417_23245 - queuine tRNA-ribosyltransferase, at 5,034,337 to 5,035,461 _23245 Position (kb) 5033 5034 5035Strain fitness (log2 ratio) -1 0 1 2 3at 5033.957 kb on - strandat 5033.957 kb on - strandat 5033.957 kb on - strandat 5034.701 kb on - strand, within PS417_23245

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Per-strain Table

Position Strand Gene LocusTag Fraction root sample 6; outgrowth in LB
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5,033,957 - +3.3
5,033,957 - -1.3
5,033,957 - +0.2
5,034,701 - PS417_23245 0.32 +0.7

Or see this region's nucleotide sequence