Experiment: root sample 6; outgrowth in LB
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt PS417_23220 and PS417_23225 are separated by 58 nucleotides PS417_23225 and PS417_23230 are separated by 123 nucleotides PS417_23230 and PS417_23235 are separated by 9 nucleotides
PS417_23220: PS417_23220 - inositol monophosphatase, at 5,029,560 to 5,030,375
_23220
PS417_23225: PS417_23225 - hypothetical protein, at 5,030,434 to 5,030,976
_23225
PS417_23230: PS417_23230 - preprotein translocase subunit SecF, at 5,031,100 to 5,032,014
_23230
PS417_23235: PS417_23235 - preprotein translocase subunit SecD, at 5,032,024 to 5,033,892
_23235
Position (kb) 5031
5032
5033 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3 at 5030.541 kb on - strand, within PS417_23225 at 5030.612 kb on + strand, within PS417_23225 at 5030.613 kb on - strand, within PS417_23225 at 5030.613 kb on - strand, within PS417_23225 at 5030.616 kb on + strand, within PS417_23225 at 5030.617 kb on - strand, within PS417_23225 at 5030.697 kb on + strand, within PS417_23225 at 5030.749 kb on + strand, within PS417_23225 at 5030.750 kb on - strand, within PS417_23225 at 5030.836 kb on + strand, within PS417_23225 at 5030.836 kb on + strand, within PS417_23225 at 5030.877 kb on - strand, within PS417_23225 at 5030.903 kb on + strand, within PS417_23225 at 5030.903 kb on + strand, within PS417_23225 at 5030.903 kb on + strand, within PS417_23225 at 5030.904 kb on - strand, within PS417_23225 at 5030.904 kb on - strand, within PS417_23225 at 5030.904 kb on - strand, within PS417_23225 at 5030.929 kb on + strand at 5030.930 kb on - strand at 5030.930 kb on - strand at 5031.144 kb on + strand at 5031.145 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction root sample 6; outgrowth in LB remove 5,030,541 - PS417_23225 0.20 +1.1 5,030,612 + PS417_23225 0.33 -0.6 5,030,613 - PS417_23225 0.33 -0.6 5,030,613 - PS417_23225 0.33 -0.4 5,030,616 + PS417_23225 0.34 +3.2 5,030,617 - PS417_23225 0.34 -0.5 5,030,697 + PS417_23225 0.48 -1.1 5,030,749 + PS417_23225 0.58 -1.5 5,030,750 - PS417_23225 0.58 -0.4 5,030,836 + PS417_23225 0.74 +0.7 5,030,836 + PS417_23225 0.74 +0.9 5,030,877 - PS417_23225 0.82 +1.0 5,030,903 + PS417_23225 0.86 +0.8 5,030,903 + PS417_23225 0.86 -0.1 5,030,903 + PS417_23225 0.86 -0.1 5,030,904 - PS417_23225 0.87 -0.2 5,030,904 - PS417_23225 0.87 -0.2 5,030,904 - PS417_23225 0.87 -0.1 5,030,929 + -0.5 5,030,930 - +0.6 5,030,930 - -1.4 5,031,144 + -3.6 5,031,145 - +0.2
Or see this region's nucleotide sequence