Experiment: root sample 6; outgrowth in LB
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt PS417_23210 and PS417_23215 are separated by 2 nucleotides PS417_23215 and PS417_23220 are separated by 145 nucleotides PS417_23220 and PS417_23225 are separated by 58 nucleotides PS417_23225 and PS417_23230 are separated by 123 nucleotides
PS417_23210: PS417_23210 - serine acetyltransferase, at 5,027,859 to 5,028,641
_23210
PS417_23215: PS417_23215 - RNA methyltransferase, at 5,028,644 to 5,029,414
_23215
PS417_23220: PS417_23220 - inositol monophosphatase, at 5,029,560 to 5,030,375
_23220
PS417_23225: PS417_23225 - hypothetical protein, at 5,030,434 to 5,030,976
_23225
PS417_23230: PS417_23230 - preprotein translocase subunit SecF, at 5,031,100 to 5,032,014
_23230
Position (kb) 5029
5030
5031 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3 at 5028.658 kb on + strand at 5028.710 kb on + strand at 5028.712 kb on + strand at 5028.712 kb on + strand at 5028.713 kb on - strand at 5028.713 kb on - strand at 5028.713 kb on - strand at 5028.835 kb on - strand, within PS417_23215 at 5028.835 kb on - strand, within PS417_23215 at 5028.835 kb on - strand, within PS417_23215 at 5028.902 kb on + strand, within PS417_23215 at 5028.903 kb on - strand, within PS417_23215 at 5028.951 kb on + strand, within PS417_23215 at 5029.381 kb on + strand at 5029.472 kb on - strand at 5029.486 kb on - strand at 5030.541 kb on - strand, within PS417_23225 at 5030.612 kb on + strand, within PS417_23225 at 5030.613 kb on - strand, within PS417_23225 at 5030.613 kb on - strand, within PS417_23225 at 5030.616 kb on + strand, within PS417_23225 at 5030.617 kb on - strand, within PS417_23225 at 5030.697 kb on + strand, within PS417_23225 at 5030.749 kb on + strand, within PS417_23225 at 5030.750 kb on - strand, within PS417_23225 at 5030.836 kb on + strand, within PS417_23225 at 5030.836 kb on + strand, within PS417_23225 at 5030.877 kb on - strand, within PS417_23225 at 5030.903 kb on + strand, within PS417_23225 at 5030.903 kb on + strand, within PS417_23225 at 5030.903 kb on + strand, within PS417_23225 at 5030.904 kb on - strand, within PS417_23225 at 5030.904 kb on - strand, within PS417_23225 at 5030.904 kb on - strand, within PS417_23225 at 5030.929 kb on + strand at 5030.930 kb on - strand at 5030.930 kb on - strand at 5031.144 kb on + strand at 5031.145 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction root sample 6; outgrowth in LB remove 5,028,658 + -0.0 5,028,710 + -0.3 5,028,712 + +0.6 5,028,712 + +0.5 5,028,713 - +1.5 5,028,713 - +0.1 5,028,713 - +2.4 5,028,835 - PS417_23215 0.25 -0.4 5,028,835 - PS417_23215 0.25 -1.4 5,028,835 - PS417_23215 0.25 +0.8 5,028,902 + PS417_23215 0.33 +1.0 5,028,903 - PS417_23215 0.34 -0.1 5,028,951 + PS417_23215 0.40 +0.8 5,029,381 + -2.3 5,029,472 - +2.3 5,029,486 - +0.1 5,030,541 - PS417_23225 0.20 +1.1 5,030,612 + PS417_23225 0.33 -0.6 5,030,613 - PS417_23225 0.33 -0.6 5,030,613 - PS417_23225 0.33 -0.4 5,030,616 + PS417_23225 0.34 +3.2 5,030,617 - PS417_23225 0.34 -0.5 5,030,697 + PS417_23225 0.48 -1.1 5,030,749 + PS417_23225 0.58 -1.5 5,030,750 - PS417_23225 0.58 -0.4 5,030,836 + PS417_23225 0.74 +0.7 5,030,836 + PS417_23225 0.74 +0.9 5,030,877 - PS417_23225 0.82 +1.0 5,030,903 + PS417_23225 0.86 +0.8 5,030,903 + PS417_23225 0.86 -0.1 5,030,903 + PS417_23225 0.86 -0.1 5,030,904 - PS417_23225 0.87 -0.2 5,030,904 - PS417_23225 0.87 -0.2 5,030,904 - PS417_23225 0.87 -0.1 5,030,929 + -0.5 5,030,930 - +0.6 5,030,930 - -1.4 5,031,144 + -3.6 5,031,145 - +0.2
Or see this region's nucleotide sequence