Experiment: root sample 6; outgrowth in LB
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt PS417_23185 and PS417_23190 are separated by 8 nucleotides PS417_23190 and PS417_23195 are separated by 28 nucleotides PS417_23195 and PS417_23200 are separated by 99 nucleotides PS417_23200 and PS417_23205 are separated by 50 nucleotides PS417_23205 and PS417_23210 are separated by 291 nucleotides
PS417_23185: PS417_23185 - co-chaperone HscB, at 5,024,443 to 5,024,964
_23185
PS417_23190: PS417_23190 - iron-sulfur cluster assembly protein, at 5,024,973 to 5,025,296
_23190
PS417_23195: PS417_23195 - scaffolding protein, at 5,025,325 to 5,025,711
_23195
PS417_23200: PS417_23200 - cysteine desulfurase, at 5,025,811 to 5,027,025
_23200
PS417_23205: PS417_23205 - transcriptional regulator, at 5,027,076 to 5,027,567
_23205
PS417_23210: PS417_23210 - serine acetyltransferase, at 5,027,859 to 5,028,641
_23210
Position (kb) 5025
5026
5027
5028 Strain fitness (log2 ratio) -1
0
1
2 at 5025.327 kb on - strand at 5025.327 kb on - strand at 5025.327 kb on - strand at 5025.807 kb on - strand at 5027.349 kb on - strand, within PS417_23205 at 5027.447 kb on - strand, within PS417_23205 at 5027.576 kb on - strand at 5027.576 kb on - strand at 5027.576 kb on - strand at 5027.870 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction root sample 6; outgrowth in LB remove 5,025,327 - -0.9 5,025,327 - -0.8 5,025,327 - -0.2 5,025,807 - +2.6 5,027,349 - PS417_23205 0.55 -1.6 5,027,447 - PS417_23205 0.75 -0.8 5,027,576 - +0.5 5,027,576 - -1.4 5,027,576 - -0.7 5,027,870 - +0.9
Or see this region's nucleotide sequence