Strain Fitness in Pseudomonas simiae WCS417 around PS417_23195

Experiment: root sample 6; outgrowth in LB

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPS417_23180 and PS417_23185 are separated by 53 nucleotidesPS417_23185 and PS417_23190 are separated by 8 nucleotidesPS417_23190 and PS417_23195 are separated by 28 nucleotidesPS417_23195 and PS417_23200 are separated by 99 nucleotides PS417_23180: PS417_23180 - chaperone protein HscA, at 5,022,527 to 5,024,389 _23180 PS417_23185: PS417_23185 - co-chaperone HscB, at 5,024,443 to 5,024,964 _23185 PS417_23190: PS417_23190 - iron-sulfur cluster assembly protein, at 5,024,973 to 5,025,296 _23190 PS417_23195: PS417_23195 - scaffolding protein, at 5,025,325 to 5,025,711 _23195 PS417_23200: PS417_23200 - cysteine desulfurase, at 5,025,811 to 5,027,025 _23200 Position (kb) 5025 5026Strain fitness (log2 ratio) -1 0 1 2at 5025.327 kb on - strandat 5025.327 kb on - strandat 5025.327 kb on - strandat 5025.807 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction root sample 6; outgrowth in LB
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5,025,327 - -0.9
5,025,327 - -0.8
5,025,327 - -0.2
5,025,807 - +2.6

Or see this region's nucleotide sequence