Strain Fitness in Pseudomonas simiae WCS417 around PS417_23180

Experiment: root sample 6; outgrowth in LB

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPS417_23165 and PS417_23170 are separated by 92 nucleotidesPS417_23170 and PS417_23175 are separated by 14 nucleotidesPS417_23175 and PS417_23180 are separated by 3 nucleotidesPS417_23180 and PS417_23185 are separated by 53 nucleotidesPS417_23185 and PS417_23190 are separated by 8 nucleotidesPS417_23190 and PS417_23195 are separated by 28 nucleotides PS417_23165: PS417_23165 - nucleoside diphosphate kinase, at 5,021,449 to 5,021,874 _23165 PS417_23170: PS417_23170 - FeS assembly protein IscX, at 5,021,967 to 5,022,167 _23170 PS417_23175: PS417_23175 - 2Fe-2S ferredoxin, at 5,022,182 to 5,022,523 _23175 PS417_23180: PS417_23180 - chaperone protein HscA, at 5,022,527 to 5,024,389 _23180 PS417_23185: PS417_23185 - co-chaperone HscB, at 5,024,443 to 5,024,964 _23185 PS417_23190: PS417_23190 - iron-sulfur cluster assembly protein, at 5,024,973 to 5,025,296 _23190 PS417_23195: PS417_23195 - scaffolding protein, at 5,025,325 to 5,025,711 _23195 Position (kb) 5022 5023 5024 5025Strain fitness (log2 ratio) -2 -1 0 1at 5021.895 kb on - strandat 5021.923 kb on - strandat 5021.925 kb on - strandat 5022.145 kb on - strand, within PS417_23170at 5022.145 kb on - strand, within PS417_23170at 5022.159 kb on - strandat 5025.327 kb on - strandat 5025.327 kb on - strandat 5025.327 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction root sample 6; outgrowth in LB
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5,021,895 - +1.5
5,021,923 - +1.4
5,021,925 - -1.9
5,022,145 - PS417_23170 0.89 -2.1
5,022,145 - PS417_23170 0.89 -0.6
5,022,159 - -0.1
5,025,327 - -0.9
5,025,327 - -0.8
5,025,327 - -0.2

Or see this region's nucleotide sequence