Experiment: root sample 6; outgrowth in LB
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt PS417_23160 and PS417_23165 are separated by 29 nucleotides PS417_23165 and PS417_23170 are separated by 92 nucleotides PS417_23170 and PS417_23175 are separated by 14 nucleotides PS417_23175 and PS417_23180 are separated by 3 nucleotides
PS417_23160: PS417_23160 - 50S rRNA methyltransferase, at 5,020,271 to 5,021,419
_23160
PS417_23165: PS417_23165 - nucleoside diphosphate kinase, at 5,021,449 to 5,021,874
_23165
PS417_23170: PS417_23170 - FeS assembly protein IscX, at 5,021,967 to 5,022,167
_23170
PS417_23175: PS417_23175 - 2Fe-2S ferredoxin, at 5,022,182 to 5,022,523
_23175
PS417_23180: PS417_23180 - chaperone protein HscA, at 5,022,527 to 5,024,389
_23180
Position (kb) 5021
5022 Strain fitness (log2 ratio) -2
-1
0
1 at 5020.615 kb on - strand, within PS417_23160 at 5020.615 kb on - strand, within PS417_23160 at 5020.657 kb on - strand, within PS417_23160 at 5021.439 kb on - strand at 5021.895 kb on - strand at 5021.923 kb on - strand at 5021.925 kb on - strand at 5022.145 kb on - strand, within PS417_23170 at 5022.145 kb on - strand, within PS417_23170 at 5022.159 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction root sample 6; outgrowth in LB remove 5,020,615 - PS417_23160 0.30 +0.0 5,020,615 - PS417_23160 0.30 +0.2 5,020,657 - PS417_23160 0.34 -1.7 5,021,439 - +0.2 5,021,895 - +1.5 5,021,923 - +1.4 5,021,925 - -1.9 5,022,145 - PS417_23170 0.89 -2.1 5,022,145 - PS417_23170 0.89 -0.6 5,022,159 - -0.1
Or see this region's nucleotide sequence