Strain Fitness in Pseudomonas simiae WCS417 around PS417_02310

Experiment: root sample 6; outgrowth in LB

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPS417_02300 and PS417_02310 are separated by 113 nucleotidesPS417_02310 and PS417_02315 overlap by 8 nucleotidesPS417_02315 and PS417_02320 are separated by 40 nucleotides PS417_02300: PS417_02300 - lipid transporter ATP-binding/permease, at 526,383 to 528,188 _02300 PS417_02310: PS417_02310 - heptose 1-phosphate adenyltransferase, at 528,302 to 529,726 _02310 PS417_02315: PS417_02315 - NAD-dependent dehydratase, at 529,719 to 530,645 _02315 PS417_02320: PS417_02320 - metal ABC transporter ATPase, at 530,686 to 531,645 _02320 Position (kb) 528 529 530Strain fitness (log2 ratio) -1 0 1at 528.262 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction root sample 6; outgrowth in LB
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528,262 + -0.0

Or see this region's nucleotide sequence